Protein

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Genbank accession
YP_009598764.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYQLVSAIAQLMAAGTAWAEVDLSTLTLSQIDSAYSDVYLRVSNPFWTSDRTMRFGEITSGYVQRDQTLAQFFAAQGNNTLPSTNGIASIAKGSIKYADAYWAGYQLERGRYLQSPTTIPQPDEADCLIMSKPGVDARVFHKNCLVSINGLIHRVDADSQYIYVIDAGKSNYLSRRNEVGIINFQDIGELTCVTITADMLFRAHSDQPFANQIFIKSPVEAQGKTVALVMGGYLFLLDGLSFFRTADDIFCLDTQSVPLLDRFYESRALIDMSNLGLEYNGAHDAQISRDQLYSDAVLTNWLTMSQSFLVLIDSPKVVVERQQLAPTQIAKQYLAFDEPSLPLVGGFGLLWPYWVQEDDGVFSVTVGDNIYHHRLFHTTPASQATMPADNRIPYNRESYSYAHFLDVQSEKVVITPNT
Physico‐chemical
properties
protein length:418 AA
molecular weight: 46700,13740 Da
isoelectric point:4,83270
aromaticity:0,11244
hydropathy:-0,08589

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009598764.1
1 418
Domain Start End Length (AA) Confidence
N-terminal 1 196 196 0,0452
Central domain 197 395 200 0,0660
C-terminal 396 418 22 0,9811
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-196
Central
197-395
C-terminal
396-418

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RP12
[NCBI] 		1923889 Uroviricota > Caudoviricetes > Chimalliviridae > Ripduovirus RP12 >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009598764.1 [NCBI]
Genbank nucleotide accession
NC_041911 [NCBI]
CDS location
range 77964 -> 79220
strand -
CDS
ATGTATCAACTGGTCTCTGCAATTGCACAACTCATGGCCGCCGGGACAGCTTGGGCTGAGGTGGATCTGAGCACTTTGACGCTGTCTCAAATCGACAGCGCGTATTCGGATGTTTACCTGCGCGTCAGCAATCCATTCTGGACTAGCGATCGTACGATGCGCTTTGGTGAGATCACCAGCGGCTACGTACAGCGCGACCAGACACTGGCACAGTTCTTTGCCGCACAAGGCAATAACACGCTGCCGTCGACTAACGGCATTGCCTCGATCGCTAAAGGCAGCATCAAGTATGCTGACGCCTACTGGGCAGGTTATCAGCTGGAGCGCGGTCGTTATCTGCAAAGTCCGACTACGATTCCCCAGCCTGATGAGGCAGATTGTCTCATCATGTCGAAGCCCGGTGTTGATGCCCGGGTTTTCCATAAGAATTGCTTGGTCTCGATCAACGGTCTGATCCACCGTGTCGATGCTGACAGCCAGTACATCTACGTAATCGATGCTGGTAAGAGCAATTATCTCAGCCGTCGTAATGAAGTCGGCATCATCAACTTCCAAGACATTGGCGAGTTGACCTGTGTGACGATTACTGCCGATATGCTGTTCCGCGCTCATTCCGATCAGCCGTTCGCTAATCAGATCTTTATCAAGAGTCCAGTTGAGGCTCAGGGTAAGACTGTGGCGTTGGTGATGGGTGGTTATCTGTTCTTGCTGGATGGCTTGAGCTTCTTCCGCACTGCGGATGACATTTTCTGTCTGGACACTCAGTCCGTGCCACTGTTGGATCGTTTCTACGAATCCCGCGCACTGATCGACATGTCGAATCTGGGATTGGAGTACAACGGTGCTCACGATGCTCAGATCTCTCGCGATCAGCTCTACAGTGATGCCGTGTTGACCAACTGGTTGACAATGTCTCAAAGTTTCTTGGTTCTCATCGATAGCCCCAAAGTGGTCGTTGAGCGTCAACAACTGGCGCCTACCCAAATTGCCAAACAGTATCTGGCTTTTGACGAACCGTCTCTACCGCTCGTCGGTGGTTTCGGTCTGCTGTGGCCGTACTGGGTACAGGAAGACGATGGCGTCTTTTCGGTGACTGTAGGTGACAACATCTACCATCACCGGCTATTCCACACTACACCGGCAAGTCAGGCTACGATGCCTGCCGACAACCGCATCCCGTATAACCGAGAATCGTACAGCTACGCCCACTTCCTGGATGTGCAGTCCGAAAAGGTTGTGATCACTCCCAACACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
63dbb0cea5aef2279d4e638ccc58b4a0cd953f2c5d4c780568375101d220aa3b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2583
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of two jumbo phages RP12 and RP31 infecting the phytopathogen Ralstonia solanacearum Kawasaki,T., Yoshikawa,G., Ogata,H. and Yamada,T. 2020 — GenBank