Protein

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Genbank accession
QIG66677.1 [GenBank]
Protein name
tail collar domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,57
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MTQFDFGTINPATTTGTALASLLGSFRTSLATGHSGIARPTYVQTGQTWLDTSGATWILKQYDGSTDVTLGIIDPATHKWYPNLTNLQAEVTIASAATTDVLGAASARVVVTGTTAITSFGTTPNTIKFVRFSGGLTITNNANIVTNDGANLVVLAGATIIVMSDASGVARIWGSPSGGGVIGQVSYFAMNSQPVGYLKCNGAAYSRTAYSALFAAIGTTYGVGDGSTTFNVPELRGEFIRCLDDGRGIDASRALASAQGSQNLSHAHSISDPGHAHSIADGGHQHYFGASYIGSGIGSNGGYVNASNNNGALTGVSGTGIGIYGAGTGISIVANGGSEARPRNIPMLACIKY
Physico‐chemical
properties
protein length:353 AA
molecular weight: 35933,53300 Da
isoelectric point:6,69270
aromaticity:0,07932
hydropathy:0,08980

Domains

Domains [InterPro]
DC_1413
STR
3–353
DC_1413
IPR037053
ATT
178–236
IPR037053
SSF88874
STR
181–353
SSF88874
IPR011083
ATT
183–240
IPR011083
QIG66677.1
1 353
Architecture
STR
ATT
STR
STR 3-177 | ATT 178-240 | STR 241-353
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG66677.1
1 353
Domain Start End Length (AA) Confidence
N-terminal 1 242 242 0,2064
Central domain 243 342 101 0,0008
C-terminal 343 353 10 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-242
Central
243-342
C-terminal
343-353

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_TM16
[NCBI] 		2509755 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG66677.1 [NCBI]
Genbank nucleotide accession
MN988459 [NCBI]
CDS location
range 11066 -> 12127
strand +
CDS
ATGACGCAATTTGACTTCGGCACCATCAACCCCGCGACCACCACGGGTACGGCGCTGGCTTCGCTCCTCGGCTCCTTCAGGACCTCGCTGGCCACTGGGCATTCCGGCATCGCTCGCCCGACCTACGTCCAGACGGGGCAGACATGGCTGGACACCTCTGGCGCAACGTGGATTTTGAAGCAGTACGACGGCTCGACCGACGTGACGCTGGGCATCATCGATCCGGCGACCCACAAGTGGTACCCGAACCTGACGAACCTTCAGGCGGAAGTGACGATCGCCTCGGCCGCCACCACCGACGTCCTCGGGGCTGCATCGGCTCGCGTCGTTGTCACCGGTACCACGGCGATCACCTCCTTTGGTACGACACCGAACACAATCAAGTTCGTCCGCTTCTCGGGCGGCCTGACGATCACCAACAACGCCAACATCGTCACCAACGACGGGGCCAACCTTGTGGTCTTGGCCGGGGCGACGATCATTGTCATGTCGGACGCCTCGGGCGTAGCTCGCATCTGGGGATCGCCGTCTGGCGGCGGTGTTATCGGACAGGTCTCGTATTTCGCCATGAACTCTCAGCCGGTCGGCTACCTGAAGTGCAACGGAGCGGCCTACTCACGCACCGCTTATTCCGCACTGTTCGCGGCCATCGGCACCACCTACGGCGTGGGCGACGGCAGCACGACCTTCAACGTCCCAGAGCTACGCGGCGAATTCATCCGCTGCTTGGACGATGGGCGCGGCATCGACGCCTCCCGTGCTCTCGCCTCGGCACAGGGCTCGCAGAACCTGTCGCACGCCCACTCGATCTCTGACCCGGGCCACGCCCACTCGATCGCAGACGGCGGCCACCAGCACTACTTCGGTGCGTCCTACATCGGTTCGGGTATCGGATCGAACGGTGGTTACGTCAACGCCTCGAACAACAACGGCGCTCTAACCGGCGTCAGTGGTACCGGCATCGGTATCTACGGCGCAGGCACCGGTATCTCGATTGTCGCCAACGGCGGCAGCGAAGCCCGCCCGCGCAACATCCCGATGCTCGCCTGCATTAAGTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3e27b6e6697a85ec43cbac6db9efc44f80d23a79a043de63cb40593941bcf726
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7976
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank