Protein

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Genbank accession

XPP56591.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence Phold

Probability 1,00

Protein sequence

MKREVIIGQVIERIQGFWQNDLDYQYLDLVYYQGTLYRGRDVVGGIPAGTSLDSREHWEIVFRGTSNNSFEEWDPEKEYYQGDWVLLDGTKIFEAIQDVPAGIHPEDHPDAGDYWRPVSISADDGNLLVWDISRSYIEGTSVIHEGNIYRAKTFVPAGIDITEEFYWDLIYDAEKDNLLIWRYDRAYKQGDKVLVNGTDIYEAIQDVPANSVQITNTAYWKPIYTPFTMNLLVWDINRPYVKGVTVIHEGNHYRAKKDVPTGRLITDTEYWEQTFRQNSSDPLMYHDPSVNYTQGDRVLSGNAIMIAIRDVPANTPIDDTTYWQLLYYVASSIKAWDRNGEFFAGDQVIVNNVLYECIQYIGPNLGILISNPIFWKALGDVADQLLIWNLAKAYQEGINVTHEGAIYQALQFVPENTPITDQAYWKVVVSSGGDNLMVWRRDRTYQKDDMVTVDGTIYQAKINVPFDTDITNGNYWELIYGPAPTLYTWDITDDYKAGDRAYWKGFIYQAVVDIAVADNADISDESYWVVVDEGTILLWNQNKEYQKGIQVLWNGNVYEAQQHCPQGTPITLDAYWKPVYVVPATLVQWKPGETYDVGTEVLWRGDVYEAIQDVPADINPETHADAGSYWRLEFQSDKGIQSWSFDKKYSKFDVVFEDGVFYRAIQDIPASTVQLENNLFWEEIYSDVPLEEWDQNTGYRVYSVVFFEDELYQAIQTVPAGSIAITNTAYWKKIVVSSVADIVDILDQINDLQEELQIVETISHQARDRSIDLANIENSRLNRTNAVLVSAYRNWKQANDAAESEIGFSYANRRINVIQNSITTQAEEIAQLFVAQRNNLAFALEYTRAAIGYCVDGNGNVTDHTGPISCAADGNSWVNGPLSEFVRDYAIATADGQEASFSTIGQAFQTKDGGVVARGTMLTNANGKVSGYVNTNDGSTSSIDLVAEQVRMGDYDDATGSYDPLLWLDADTRILKIRAQLVLDGGYVIKDQGDIQGAKGDSVFQEYEFSVDGVLDWHFPDRVDDKYMRQRTVTIKGSDGSREEGPWGDVIRFVGRDGAETFTWVKYATTNTGDDMWNFAKTENHKFIGIAVNMPIPEQQLSPDHPDYDSTHPSAQPNGYTDNQGVYHQTYSWSKFKGDNGQDGVSQGIEVQFSETGLDGSWHSVEQPTDKWMRTRYVIDGVGQAWQGKVKIAGEDGQDGKSTYTWIKYATSNAGDDISDGPSTPNHVFIGIAKDKPVPEGQAGDAALDPNQYQWSRIKGEDGKDGEDGIGIGRIFAFAPLILKEEFWETGDPSKEGWEGQPHKSLVELDQKPLSRYMYSQKGVVNSNGDIIPDPLWYKFEPVKINGEDGKTNYTWIKYADDNQGNGLSNSPAGKEFIGFAYNKELPEGAAEPESLDKNQYQWSRIKGLDGKDGKDGVDGVGKLFRFSSIRVEERYWTTIDPNYGKTHQQMMTVNQDQWSRFMYSQDYELDAGGFPNATMAWYDVDPVEIKGADGRSTYMWVKYAKDRFGTDMADAPNVSTGRVFMGVALNRELPEGQDPAANDYRSYTWSRIFAEDGASSEVLVKFHSSNNVNHAHWAPQRATDLYMWINRQTINPDGSKTLETPWSDIEGILIKGQKGDGTYSWIRYASDSSGGNMGTSPYSPSNPRKFIAILAKSEPDQPNNSSHPSNNPSTYGGQWSRFVGEQGEKGETGAGFYTIYGRNGEFPSTSVAIQDFKDNFGRAPGRDDHLTYRVSISSSKFTTRRYNGSSWVAPALIVNGDMIAKGTVTGDRLIAGTEIRAPKIQAGTMDSAYVTGTLVEGSTLVGGAIGVGRVNTASDGFALTFTNEHGNQETGYFRTVIDGNGILKSKGAQVSGNIEANSIAAGNISGIRVILFSWKHYKSDDHNPNGGNTLMYDSNGYKINAYSGVGDKYHGVSPVALGDPGRGGWINSDGSLNYNKVDNTLFEMMKNPRGNTNTQYNMKPHIVMYDFPDGYIPPQESNPVSDLWNAQKSVYVVRTFVEGSPAVSVPWANNTVMYGNKCWYGAEADEIRILQRGKNVNGSIQGDGSTVVFRLNHYFINCYSTDSLRTKWWFTKLF

Physico‐chemical properties

protein length:	2079 AA
molecular weight:	232999,76820 Da
isoelectric point:	4,70527
aromaticity:	0,12073
hydropathy:	-0,52973

Domains

Domains [InterPro]

DC_1986
ATT
50–128

DC_1986 DC_1986 DC_1986 IPR003610 IPR003610 G3DSA:2.10.10.90 IPR003610 DC_1986 DC_0321 DC_1022 IPR057549

IPR003610
CBM
70–118

IPR003610 DC_1986 DC_1983 G3DSA:2.10.10.90 G3DSA:2.10.10.90 IPR003610 G3DSA:2.10.10.90 IPR003610 Coil DC_1971 DC_1191

G3DSA:2.10.10.90
STR
72–162

G3DSA:2.10.10.90 IPR003610 IPR003610

IPR003610
CBM
127–170

IPR003610 G3DSA:2.10.10.90

XPP56591.1

1 2079

Architecture

ATT

STR

ATT

STR

ATT 50-334 | STR 335-365 | STR 385-479 | STR 488-579 | STR 586-684 | ATT 687-793 | STR 909-2035 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1986	ATT	DC_1986	50	128	Novel HMM	DC_1986	N-terminal	Low	Positional only	693 proteins / 693 hits
IPR003610	CBM	DC_0028	70	118	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	72	162	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
DC_1986	ATT	DC_1986	119	181	Novel HMM	DC_1986	N-terminal	Low	Positional only	693 proteins / 693 hits
IPR003610	CBM	DC_0028	127	170	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
DC_1986	ATT	DC_1986	171	233	Novel HMM	DC_1986	N-terminal	Low	Positional only	693 proteins / 693 hits
IPR003610	CBM	DC_0028	178	223	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	180	273	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
DC_1983	ATT	DC_1983	221	282	Novel HMM	DC_1983	N-terminal	Low	Positional only	12 proteins / 12 hits
IPR003610	CBM	DC_0028	231	274	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
DC_1986	ATT	DC_1986	274	334	Novel HMM	DC_1986	N-terminal	Low	Positional only	693 proteins / 693 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	286	365	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	385	428	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	387	477	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	436	479	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	488	578	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	536	579	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR003610	CBM	DC_0028	586	633	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	588	684	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
DC_1986	ATT	DC_1986	687	793	Novel HMM	DC_1986	N-terminal	Low	Positional only	693 proteins / 693 hits
IPR003610	CBM	DC_0028	690	734	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
Coil	Unmapped	-	742	769	Coils	Coil	-	-	-	-
DC_0321	STR	DC_0321	909	1191	Novel HMM	DC_0321	Central	Low	Positional only	15 proteins / 15 hits
DC_1971	STR	DC_1971	1164	1341	Novel HMM	DC_1971	Central	Low	Positional only	95 proteins / 95 hits
DC_1022	STR	DC_1022	1289	1479	Novel HMM	DC_1022	Central	Low	Positional only	9 proteins / 9 hits
DC_1191	STR	DC_1191	1429	2035	Novel HMM	DC_1191	Central	Low	Positional only	75 proteins / 75 hits
IPR057549	STR	DC_0351	1679	1778	InterPro cluster	Straight fiber protein PB4, spike domain	C-terminal	High	Text match	247 proteins / 290 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Vibrio phage Bakedbeans [NCBI]	3388590	No lineage information
Host	Vibrio campbellii [NCBI]	680	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Genbank protein accession

XPP56591.1 [NCBI]

Genbank nucleotide accession

PQ768826.1 [NCBI]

CDS location

range 65968 -> 72207
strand -

CDS

GTGAAACGTGAAGTTATTATAGGTCAGGTGATCGAGCGCATTCAGGGCTTTTGGCAGAATGATCTTGATTACCAATACCTAGATCTAGTTTACTATCAAGGTACTTTATATAGAGGACGTGACGTTGTAGGTGGGATCCCTGCAGGGACATCACTCGACAGTCGTGAGCATTGGGAAATCGTATTCCGCGGAACAAGCAACAACTCGTTTGAAGAATGGGATCCTGAGAAAGAATACTACCAAGGTGATTGGGTTCTTCTCGATGGCACCAAGATCTTTGAAGCTATTCAAGATGTACCGGCTGGTATCCATCCAGAAGACCACCCAGATGCAGGTGACTATTGGCGTCCTGTGTCAATCAGTGCAGACGACGGCAACCTCCTAGTTTGGGATATCAGCCGATCATACATTGAAGGTACGTCTGTTATCCATGAAGGTAACATATATCGCGCTAAGACATTTGTTCCTGCCGGTATCGACATCACTGAAGAGTTCTACTGGGATCTGATATACGATGCAGAGAAGGATAACTTGCTAATATGGCGCTATGACCGCGCATACAAGCAAGGTGACAAGGTATTGGTGAATGGTACCGATATCTATGAAGCCATCCAAGATGTACCTGCTAACTCAGTTCAGATCACAAACACCGCTTATTGGAAACCTATTTACACGCCGTTCACTATGAACTTATTGGTGTGGGATATCAACCGTCCATACGTTAAGGGTGTTACTGTTATCCATGAAGGTAACCACTACCGAGCTAAGAAAGATGTACCAACTGGTCGTTTGATTACGGATACTGAATACTGGGAACAGACGTTCCGTCAGAATTCGTCAGATCCGCTAATGTATCACGACCCATCGGTAAACTATACACAAGGCGATCGCGTGTTGTCGGGCAATGCTATCATGATTGCTATTCGTGATGTTCCTGCAAATACACCGATAGATGATACTACATATTGGCAGCTATTATACTATGTGGCATCGTCAATCAAAGCTTGGGATCGCAATGGAGAATTCTTTGCTGGCGATCAGGTGATTGTTAATAACGTCCTATACGAATGTATTCAATACATCGGACCGAACTTAGGTATATTGATATCTAACCCGATATTCTGGAAGGCTTTAGGCGATGTAGCTGATCAGCTATTGATTTGGAACTTGGCTAAAGCTTACCAAGAAGGGATCAACGTTACTCACGAAGGTGCTATCTACCAAGCATTACAATTCGTGCCTGAAAATACCCCTATTACAGACCAAGCTTATTGGAAAGTCGTAGTATCATCGGGCGGCGATAATCTGATGGTTTGGCGTCGCGATCGCACATATCAGAAAGATGATATGGTAACGGTGGATGGTACGATTTATCAAGCTAAGATTAACGTCCCATTTGATACAGACATCACAAACGGTAATTACTGGGAGTTAATTTACGGCCCTGCTCCTACGTTATATACTTGGGATATCACAGACGACTACAAAGCTGGTGATCGCGCTTATTGGAAAGGGTTTATATACCAAGCTGTTGTTGATATTGCAGTGGCTGATAATGCCGACATCTCCGATGAGTCATATTGGGTTGTTGTTGATGAAGGCACGATCCTTCTGTGGAACCAAAACAAAGAATATCAGAAAGGTATTCAAGTTCTATGGAATGGTAACGTGTATGAGGCTCAACAACACTGTCCTCAAGGAACTCCGATCACATTAGATGCGTATTGGAAGCCTGTATATGTCGTGCCTGCTACGTTAGTTCAATGGAAGCCTGGTGAGACTTATGATGTTGGCACTGAAGTATTGTGGCGCGGTGATGTATACGAAGCTATCCAAGATGTACCTGCAGATATTAACCCTGAGACTCACGCAGATGCAGGATCGTATTGGAGACTTGAGTTCCAATCTGACAAAGGCATTCAATCGTGGTCGTTTGATAAGAAATACTCGAAGTTTGATGTTGTGTTTGAAGATGGTGTGTTCTATCGAGCTATTCAGGATATCCCTGCATCTACAGTACAGCTAGAGAACAACCTATTTTGGGAAGAGATATATTCCGACGTTCCACTTGAAGAGTGGGATCAAAATACGGGATACCGCGTCTACTCTGTTGTGTTCTTTGAAGATGAGCTATACCAAGCTATCCAAACAGTCCCTGCAGGTAGCATTGCTATCACCAATACAGCATACTGGAAGAAGATTGTCGTAAGCTCTGTAGCTGATATCGTTGACATCTTAGACCAGATCAACGACCTTCAAGAAGAGCTTCAGATCGTAGAGACGATCAGTCATCAAGCTCGTGATAGATCTATCGATTTGGCTAACATCGAAAACAGCAGATTGAATCGAACCAATGCTGTGTTAGTGTCGGCGTATCGAAACTGGAAACAGGCTAATGATGCTGCCGAGTCTGAGATTGGATTCTCGTATGCCAATCGCCGTATCAATGTAATCCAAAACTCAATCACAACTCAAGCCGAAGAGATAGCTCAACTGTTTGTAGCTCAGCGTAACAATCTAGCATTCGCATTGGAGTATACACGAGCAGCTATTGGGTATTGTGTTGATGGTAATGGTAACGTTACCGATCACACGGGACCTATATCATGCGCTGCTGATGGTAATAGTTGGGTTAATGGTCCGTTATCTGAGTTTGTTCGCGATTATGCGATTGCTACGGCGGATGGACAAGAGGCTTCCTTTAGTACTATCGGTCAAGCTTTCCAAACAAAAGACGGTGGTGTGGTTGCTCGCGGTACGATGTTGACTAACGCTAACGGTAAGGTATCTGGATACGTCAACACCAACGATGGATCAACATCAAGTATTGACCTAGTTGCAGAACAAGTTCGCATGGGCGACTATGATGATGCGACCGGTAGCTATGATCCACTATTGTGGTTAGACGCCGATACTCGAATCTTGAAGATCCGCGCTCAATTGGTGTTGGATGGTGGATACGTCATTAAAGACCAAGGTGATATTCAAGGAGCTAAGGGCGACTCTGTATTCCAAGAGTATGAATTCAGTGTTGATGGTGTTCTCGACTGGCATTTCCCAGATCGAGTTGACGATAAATATATGCGTCAGCGTACGGTCACCATCAAAGGTAGTGACGGTTCTCGAGAAGAAGGTCCTTGGGGCGATGTGATCCGATTCGTCGGCCGTGATGGTGCAGAGACGTTCACTTGGGTGAAGTATGCTACTACCAACACCGGTGATGATATGTGGAACTTTGCTAAAACAGAGAATCACAAGTTCATTGGTATTGCAGTTAACATGCCGATACCAGAACAACAACTCAGTCCAGACCATCCTGACTATGACAGCACCCACCCATCAGCACAGCCTAATGGGTATACTGACAATCAAGGCGTATATCATCAAACGTATTCATGGAGTAAGTTTAAAGGTGATAATGGTCAAGATGGTGTATCTCAAGGCATTGAGGTTCAATTCTCTGAAACAGGTCTTGATGGATCGTGGCATTCGGTTGAGCAGCCTACTGATAAGTGGATGCGCACTCGATATGTGATTGATGGTGTCGGCCAAGCGTGGCAAGGCAAGGTTAAGATCGCTGGTGAAGATGGCCAAGATGGTAAATCGACATATACGTGGATCAAATATGCAACATCGAATGCCGGTGATGACATATCAGATGGTCCAAGTACACCTAACCATGTGTTTATTGGAATCGCTAAAGATAAACCTGTACCGGAAGGTCAAGCTGGTGATGCAGCATTAGATCCAAATCAATATCAATGGAGCCGAATCAAGGGTGAAGATGGTAAGGATGGTGAGGATGGTATAGGAATTGGACGTATATTTGCATTCGCTCCACTTATATTGAAAGAGGAGTTCTGGGAAACTGGTGACCCTAGTAAAGAGGGTTGGGAGGGACAACCTCATAAAAGTTTAGTTGAACTGGATCAAAAACCTCTCAGCCGATATATGTACAGCCAAAAAGGGGTGGTAAATTCCAATGGTGATATTATCCCAGATCCGCTATGGTATAAATTTGAGCCTGTCAAAATTAACGGAGAAGACGGTAAGACCAACTACACTTGGATTAAGTACGCTGATGACAACCAAGGTAACGGTTTATCCAATAGCCCTGCTGGTAAAGAGTTTATAGGTTTTGCATACAACAAAGAGCTACCTGAAGGTGCCGCAGAACCGGAATCTTTAGATAAGAACCAATATCAATGGAGTCGAATCAAAGGGCTTGATGGTAAAGATGGCAAAGATGGGGTTGATGGTGTAGGTAAGCTATTCAGGTTTAGTAGCATCCGAGTTGAAGAGCGGTATTGGACGACTATTGACCCTAATTACGGCAAAACTCACCAACAGATGATGACTGTCAACCAAGATCAGTGGAGCCGATTCATGTATTCGCAAGATTATGAATTGGATGCCGGTGGATTTCCAAACGCAACAATGGCTTGGTATGATGTTGATCCTGTAGAGATTAAAGGCGCTGATGGTCGATCAACATACATGTGGGTTAAGTATGCGAAAGATCGATTCGGTACTGACATGGCAGATGCTCCGAACGTATCCACAGGTCGTGTGTTTATGGGTGTTGCCCTAAACCGAGAGCTACCTGAAGGTCAAGATCCTGCAGCTAACGACTATCGCAGTTATACATGGTCAAGAATCTTTGCAGAAGATGGTGCTTCATCTGAAGTGTTGGTTAAATTCCACAGCTCAAATAATGTGAACCACGCTCACTGGGCACCGCAACGTGCAACCGACTTGTATATGTGGATCAACCGACAAACTATCAATCCTGACGGATCCAAAACACTGGAAACACCTTGGTCTGATATTGAAGGTATCTTGATTAAAGGTCAGAAGGGTGATGGTACATATTCATGGATTCGATATGCTAGTGATAGTAGTGGCGGCAATATGGGTACATCTCCATACAGCCCTAGCAATCCGCGTAAGTTTATTGCGATATTGGCTAAGAGTGAACCTGATCAGCCTAATAACTCTTCTCACCCAAGTAACAACCCATCAACATATGGTGGTCAATGGAGTCGATTTGTAGGTGAACAGGGTGAGAAAGGTGAAACGGGTGCTGGGTTTTATACGATATACGGTAGGAACGGTGAGTTCCCATCAACATCAGTAGCTATACAAGACTTTAAAGACAACTTTGGTCGAGCTCCTGGTCGAGACGATCATTTAACATATCGAGTTAGTATTAGTAGCAGTAAGTTTACGACACGTCGATATAATGGTTCATCTTGGGTAGCGCCAGCGCTTATAGTTAACGGTGACATGATTGCCAAAGGTACTGTTACAGGTGACCGTTTGATTGCTGGTACAGAAATCAGAGCACCGAAGATCCAAGCAGGTACCATGGATTCGGCTTATGTTACGGGTACTTTGGTTGAAGGTTCGACGTTAGTAGGTGGCGCTATAGGGGTCGGTCGAGTTAACACCGCATCGGACGGTTTCGCGTTGACTTTCACCAACGAGCATGGTAATCAAGAGACTGGATACTTTAGAACTGTCATAGATGGTAATGGTATTCTGAAGAGTAAAGGTGCTCAGGTATCAGGCAATATTGAGGCTAACTCGATAGCTGCTGGTAATATTTCTGGTATTCGTGTGATTCTATTCTCATGGAAACATTATAAGAGTGATGATCATAACCCTAACGGCGGCAATACGTTGATGTATGACTCAAATGGTTATAAAATCAACGCTTATTCTGGAGTTGGAGATAAGTATCATGGAGTATCTCCTGTGGCGTTGGGCGATCCTGGTAGAGGTGGATGGATTAATAGCGACGGTTCATTAAACTACAATAAAGTAGATAATACGCTATTTGAGATGATGAAGAATCCTAGAGGAAATACCAACACACAATATAACATGAAGCCTCATATTGTGATGTATGATTTCCCAGATGGTTATATCCCACCACAAGAATCTAATCCGGTTAGTGATTTGTGGAATGCTCAGAAGTCTGTATATGTTGTTCGGACGTTTGTTGAAGGGTCACCTGCAGTATCGGTACCGTGGGCTAACAACACCGTAATGTATGGTAATAAATGCTGGTATGGTGCAGAGGCTGATGAGATCCGAATATTACAGCGTGGTAAAAACGTAAATGGTAGTATTCAAGGAGATGGGTCAACGGTAGTGTTTCGACTCAACCACTACTTTATCAACTGTTATAGTACAGATAGCTTGCGCACCAAGTGGTGGTTCACTAAACTATTCTAG

Genome Context

Tertiary structure

PDB ID

d4781a724761f7452f93aa170d41b62e1d4ec70f1386b37e04200596439aabca

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,4666

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence