Protein

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Genbank accession
XXQ00359.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MAAQATRKVYVQDWYNVTPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPINYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPSNVVSTYVGDDLNPSYPAAGDYYQPLATVWLGLPNTNSTIILTTEVIMGNINTAGQRVSTYSGQAWRVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEMAFRRNGYIYTVKNLGNGNVELGVIIHAAEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:328 AA
molecular weight: 36043,97130 Da
isoelectric point:9,11062
aromaticity:0,12805
hydropathy:-0,22591

Domains

Domains [InterPro]
IPR059609
RBD
5–328
IPR059609
XXQ00359.1
1 328
Architecture
RBD
RBD 5-328
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXQ00359.1
1 328
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,2280
Central domain 17 215 200 0,0872
C-terminal 216 328 112 0,9986
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-215
C-terminal
216-328

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage MET_P1-197_46
[NCBI] 		3447393 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Anatum
[NCBI] 		58712 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXQ00359.1 [NCBI]
Genbank nucleotide accession
PV804859 [NCBI]
CDS location
range 18062 -> 19048
strand +
CDS
ATGGCTGCGCAAGCCACTAGAAAGGTATATGTACAGGACTGGTATAACGTCACTCCTACTAAGGTTATTTGGTATGTGCTAAATCTGCGCTATTCTAATGGTAATATGGGAGTTTCTGGTAATCCATTTACTGGTTCTGATATCCTTATTTCTCCCTCTAATTTTACTATTAAAGGGGTTAGTTTACCAAATACAGGATATAAATTCATTAACCAGAATGCCTTTGGAAACTTAGGCTATCGCCCTGATATGGAGTATGTTGGTAATAATGCTGCATATACTGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATAGGCTCCAGTAATGGTGGATTGTGGTCACCCATTAACTATGGAGGTGCAGCTTCCCAAATTAGCCTTTATAAATTTGGTGTAGGTAAACAATGGTATGTAGATACTAATACTAACTCCATTGGTAATGAACATGGACCTGTATGGAGTCCTAGTACAGTACCTTTAAGGTTATTCCCTAGCAATGTTGTCAGTACTTATGTTGGGGATGACCTCAATCCATCTTATCCTGCAGCAGGTGATTACTACCAGCCTTTAGCAACAGTCTGGTTAGGACTGCCTAACACCAACTCTACTATCATATTAACTACCGAAGTTATTATGGGCAACATTAACACTGCGGGACAACGTGTTAGTACATACAGTGGGCAGGCCTGGCGTGTACAAGGTAGACGCCAACAGAGTTACACTGCGGGGGATGGTATATTTCACCAAATCCTTACCCTACCACCTGGCTATCTAGTACCATATCACAGTACAACTTCCTATAGTTACACACAAACTTGGGCTAGTAGACCTGATGAGATGGCTTTTCGTAGAAATGGGTATATTTATACAGTAAAAAACCTTGGTAACGGTAACGTTGAATTAGGAGTTATTATCCATGCTGCCGAAGCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f62400b6a635ccdf6885a582b3feb8fa3c6158ee868e357d00446a46844777f6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7362
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50