Protein

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Genbank accession
YP_009849830.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNANSIFHSDMPFVLVDGTYEAALGNAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSQVGQFTAFFEDPPIGRAGAEVGLTSAFASGNSLAHGTYIYNSGLGHEESIARQGTGGTISQASGFNLYRPGGAYAGEAIGRAWTLAGFPAGASTVPIDGGNADYWHPNWQAPIGAAHRGHNWFYVCNSNIRGYVGKKGTVPANVNLLYQSPTYPDKVYICKGSTSNLAAQAAKKVYVQDGYNITPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILITPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYIGNNAAYTGAFGDTTARCEIVGSSNGSLWSPVDYGGAKSQISIYKFGAGKQWYVNSSNNTIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPAYPGAGNYYTALATIGLGLPNANATVILTTEVIMGNINTAGGAIRTYGGTAWQVQGRRQHSYTEGDGIFHQILTLPPGYLVPYHSTTAYSYTQTWASRPDELTFRRNGYIYTIKNLGNGNAELGVIIHADEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:595 AA
molecular weight: 63669,16120 Da
isoelectric point:8,12825
aromaticity:0,11765
hydropathy:-0,20672

Domains

Domains [InterPro]
IPR059609
RBD
1–595
IPR059609
YP_009849830.1
1 595
Architecture
RBD
RBD 1-595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009849830.1
1 595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0517
Central domain 11 212 203 0,6516
C-terminal 213 595 382 0,8703
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-212
C-terminal
213-595

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Th1
[NCBI] 		2589656 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus Th1
Host Salmonella gallinarum
[NCBI] 		594 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009849830.1 [NCBI]
Genbank nucleotide accession
NC_048795 [NCBI]
CDS location
range 107140 -> 108927
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAATGCCAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGTACTTACGAGGCTGCATTAGGCAATGCTGGAAATGGGTTTTTTGTATGTCAGATGCCTTCTGACATAATAAATATTAAATCCAACGACCCAGGTAGAGTTATACTAACTGCCATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAATCTCAGGTTGGTCAATTCACTGCATTTTTTGAAGACCCACCTATTGGTAGGGCGGGTGCCGAAGTAGGTCTTACGTCAGCTTTTGCATCAGGTAACAGCTTAGCACATGGCACTTATATTTATAACTCTGGTTTAGGGCATGAAGAATCAATTGCTAGGCAGGGTACAGGAGGTACTATATCTCAAGCTTCCGGGTTTAATTTATATAGGCCGGGAGGAGCATATGCTGGTGAGGCTATAGGTAGGGCATGGACTTTAGCAGGATTTCCAGCAGGAGCGTCTACAGTACCTATAGACGGTGGTAATGCTGACTACTGGCATCCTAACTGGCAAGCTCCTATAGGGGCCGCCCATAGGGGGCATAATTGGTTTTACGTTTGCAACTCTAACATACGAGGTTATGTAGGTAAAAAGGGCACAGTACCGGCTAATGTTAACTTATTGTATCAATCTCCTACCTACCCTGATAAGGTTTATATATGCAAAGGTTCAACATCTAATCTAGCGGCACAGGCCGCTAAGAAAGTGTATGTGCAGGATGGTTATAATATTACACCTACCAAAGTTATTTGGTATGTACTTAATTTGAGATATTCTAATGGTAATATGGGTGTATCTGGTAATCCATTTACTGGGTCAGATATACTTATAACTCCATCTAATTTTACTATAAAAGGGGTTAGTTTACCAAATACTGGGTATAAGTTTATCAACCAAAATGCTTTTGGTAACTTAGGCTATAGGCCAGATATGGAGTACATTGGAAATAATGCAGCGTACACTGGAGCCTTCGGGGATACTACTGCACGCTGTGAAATTGTAGGATCTAGTAATGGATCTTTATGGTCTCCTGTAGATTATGGAGGGGCCAAGTCTCAAATTAGTATTTACAAATTCGGAGCGGGTAAGCAATGGTACGTAAACTCAAGTAATAACACTATAGGTAATGAGCATGGAGCTGTGTGGAGTCCTAGTACTGTACCCTTAAGACTATTTCCTAATAATGTTGCTAGCACTTACGTTGGCGATGATATAACCCCCGCATATCCTGGAGCAGGCAACTATTATACGGCTTTAGCTACTATAGGACTAGGATTACCTAATGCTAACGCAACGGTAATATTAACTACGGAAGTTATTATGGGTAATATTAATACGGCTGGAGGAGCCATACGCACATACGGTGGTACTGCTTGGCAAGTACAAGGAAGAAGACAGCATAGCTACACGGAAGGTGATGGAATATTCCATCAAATATTAACCTTACCTCCTGGATACTTAGTCCCTTATCACTCCACTACTGCATACAGTTATACTCAAACTTGGGCAAGTAGACCTGATGAGTTAACATTTAGAAGAAATGGATATATTTATACTATTAAAAATCTAGGAAATGGTAATGCTGAATTGGGTGTAATTATTCACGCTGATGAGGCTGCAGCTATTTTCCTACCGAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1ed3c6495737079343d815bafccdb5209b39c0127fe68d7ee0c94a718398ccb4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50