Protein

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Genbank accession
XYM60352.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,55
Protein sequence
MGQLVTTVVGGVLGFLIGGPMGASLGMMLGGMVGATLFGPTIKGPRLNDLKVTASTYGVAIPEIYGTARIGGNMIWSSGIKEKKKTQRAGKGGPKMTTYTYSASFATALCKGPITDVTRIWADSKLIYDRTNNASRDPAPSSASIASAPIIAAFIGSKSNKKQKYSFRIYRGDEEQLPDSLIEADKGAGNVSAHRGMAYVVFQNMPLEDFGNRIPQFTFEVTKSVNNTFPSITVKDGTGGGLSQADRRVWFPDWDNDRLFSSVIGGNGMAIMDLSTMQVQRTGTGSIYHNHAYGYLPYLNLTVRTAGLSNSSAKLFYDLSSGAYIGQVGENSRSLSGYNYVYGPNEGRFALGTGTGGNGIGATENGSMMVTVAWTRDTWILGGVGPGSKPIGWYKAPFTPAYMFPALGTVYGWRNGNNALQLYDFIGSAPGSNPLRSDGRKPIPNIYWTIGSNGAPVINVQPYGERYVARVVLFDKTDDCVFSLGWTYDAAGVATPCAFKYSITTGVFKFKQKYPGMYVVDEYMPWSRIAGGTFGWVHTDYRQPSVFYQIDLQNGDVTRQTNYWNKSVWGDSLYAGGGQAWDDLSNSVIVETRSNFRRIFFGTGIAALKLSDVVRDICVNSGELTEADIDTTGLDDTDIIGIAIDRECSARDALKQIATGYLFDAYESDYKLKFRSRGDASQVTIPESWIARDGDGEAIKENLTQELEMPLRITVNYYDTSRDHQQGSQTAKRKANPFPTMWTSKEDVVDLPIVFTPDMAKQTADKLLKMAWANRTGVQFSLPWRYLKYDPTDIATVNFGSTTYTLRFTDLDIGSNFTVQASAVSEKASAYTSTATGSQGDAPLQTIPGAGTVYPIIVNTPLLRDEDYDQSKQSVCYLTAGTLGFNFDGATIFLNDGIDAIPLAVIGKDTVTGSTLNALPYTTAYEAMDEKSILKVILNSTDELESVTQEDLLNTNANAALVGNEVIQFRTATQQTDGSWWLTGLRRARRGTNYGLKGHAVGERFVLLDAEAIGLFERPPEHYNTSANFRAAVFGDDVSDNKDYFHELKPRDLQPYTPEDVKITDDGTTVTITMARRSRVTAPMRDGFSVIHYKEGDKLAAKVSYNVWAGFDLTSAGLDVGEVSGETSVTGSVPLFDGNGQDLPIEISFPLASLTHPTKVGQQDKFLIRITEDGIAEGIPKWIEFQRLGQGRWNKTDFY
Physico‐chemical
properties
protein length:1199 AA
molecular weight: 130953,48090 Da
isoelectric point:5,44582
aromaticity:0,10759
hydropathy:-0,27823

Domains

Domains [InterPro]
DC_1879
ATT
1–311
DC_1879 DC_1657 IPR056490
IPR032876
ATT
648–807
IPR032876
DC_1311
RBD
800–1171
DC_1311
XYM60352.1
1 1199
Architecture
ATT
STR
ATT
STR
RBD
ATT 1-311 | STR 582-647 | ATT 648-807 | STR 808-838 | RBD 839-1171 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM60352.1
1 1199
Domain Start End Length (AA) Confidence
N-terminal 1 122 122 0,8661
Central domain 123 468 347 0,6000
C-terminal 469 1199 730 0,1006
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-122
Central
123-468
C-terminal
469-1199

Taxonomy

  Name Taxonomy ID Lineage
Phage Erythrobacter phage XM05
[NCBI] 		3413945 Viruses >
Host Erythrobacter sp. JL475
[NCBI] 		383381 Pseudomonadota > Alphaproteobacteria > Sphingomonadales > Erythrobacteraceae > Erythrobacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM60352.1 [NCBI]
Genbank nucleotide accession
PV416404 [NCBI]
CDS location
range 49223 -> 52822
strand -
CDS
GTGGGTCAGCTTGTCACCACCGTGGTCGGGGGCGTCCTCGGCTTCCTGATCGGCGGCCCCATGGGCGCGTCGCTCGGCATGATGCTGGGCGGCATGGTTGGTGCCACGCTGTTCGGACCCACGATCAAGGGTCCGCGCCTCAACGACCTCAAGGTCACCGCCTCCACCTACGGCGTGGCGATCCCGGAGATTTACGGGACGGCCCGCATCGGCGGCAACATGATCTGGTCCTCGGGGATCAAGGAAAAGAAGAAGACCCAGCGCGCCGGCAAGGGCGGTCCCAAGATGACCACCTACACCTACAGCGCGAGCTTTGCCACGGCGCTGTGCAAGGGTCCGATCACCGACGTGACACGTATCTGGGCGGACAGCAAGCTCATCTACGACCGCACCAACAACGCCAGCCGCGACCCGGCCCCGTCGAGCGCGTCGATCGCGTCGGCTCCGATCATCGCGGCGTTCATCGGCAGCAAGTCGAACAAGAAGCAGAAGTATTCCTTCCGCATCTATCGCGGCGACGAGGAACAACTTCCGGACTCGCTGATCGAAGCGGACAAGGGAGCCGGTAACGTATCGGCGCACCGGGGCATGGCCTATGTCGTGTTCCAGAACATGCCGCTCGAAGACTTCGGTAACCGCATTCCGCAGTTCACCTTCGAGGTCACCAAATCGGTTAACAACACCTTCCCCTCCATCACGGTCAAGGACGGAACTGGTGGAGGGCTGTCGCAGGCTGATCGCCGCGTATGGTTCCCCGATTGGGATAACGATCGCCTGTTCTCGTCGGTCATCGGCGGTAACGGTATGGCTATCATGGACCTCTCGACGATGCAGGTCCAGCGCACCGGCACCGGGAGCATCTACCACAACCACGCTTATGGCTACCTGCCCTACCTTAACCTGACGGTGCGGACGGCGGGCCTGTCCAACTCGTCGGCCAAGCTCTTCTACGACCTGTCGTCGGGTGCCTATATTGGTCAAGTCGGCGAGAACTCCCGCTCGCTCTCGGGCTATAACTATGTCTACGGCCCGAACGAAGGCCGCTTCGCGCTCGGCACCGGCACGGGCGGCAACGGCATCGGCGCGACCGAAAACGGATCGATGATGGTGACCGTGGCGTGGACCCGCGACACTTGGATTCTCGGCGGCGTCGGGCCGGGCTCGAAGCCGATCGGATGGTATAAGGCCCCCTTCACGCCGGCCTATATGTTCCCGGCGCTGGGCACCGTCTACGGCTGGCGCAACGGCAACAACGCCTTGCAGCTTTACGACTTCATTGGCAGCGCGCCGGGCTCGAACCCGCTACGCTCCGATGGCCGCAAGCCGATCCCCAACATCTACTGGACGATCGGCTCGAACGGCGCGCCGGTGATCAATGTCCAGCCCTATGGCGAACGCTATGTCGCTCGGGTGGTGCTGTTCGACAAGACCGACGATTGCGTCTTCTCGCTCGGCTGGACCTACGATGCTGCCGGTGTCGCGACGCCGTGCGCGTTCAAATACTCCATCACGACCGGCGTGTTCAAGTTCAAGCAGAAGTATCCCGGCATGTATGTCGTGGACGAATACATGCCGTGGTCGCGGATCGCCGGTGGAACATTCGGCTGGGTCCACACGGACTATCGCCAGCCGAGCGTCTTCTACCAGATCGATCTCCAGAATGGCGATGTCACGCGCCAAACGAATTACTGGAACAAGAGCGTATGGGGCGACTCGCTCTACGCGGGCGGCGGACAGGCATGGGACGATCTCAGCAACAGCGTGATCGTCGAGACCCGCAGCAACTTCCGCCGCATCTTCTTCGGCACCGGCATCGCGGCGCTCAAGCTGTCGGATGTCGTCCGCGACATCTGTGTCAACTCGGGCGAATTGACCGAGGCGGACATCGACACCACGGGCCTTGACGATACGGACATCATCGGGATCGCAATCGACCGCGAATGCTCGGCGCGTGATGCGCTCAAGCAGATCGCCACCGGCTACCTGTTCGACGCTTACGAAAGCGATTACAAGCTCAAGTTCCGCTCGCGCGGTGATGCCTCGCAGGTAACGATCCCGGAATCGTGGATCGCCCGCGACGGCGACGGAGAGGCGATCAAGGAGAACCTGACGCAGGAGCTTGAGATGCCTTTGCGGATCACGGTGAACTACTACGACACCAGCCGCGACCACCAGCAAGGATCGCAGACCGCCAAGCGCAAGGCGAATCCGTTCCCGACCATGTGGACCAGCAAGGAAGACGTGGTGGACCTACCGATCGTGTTCACCCCGGACATGGCGAAGCAGACGGCCGACAAGCTGCTCAAGATGGCGTGGGCCAACCGCACCGGCGTGCAGTTCAGTCTCCCGTGGCGCTACCTCAAGTATGACCCGACCGACATCGCCACGGTGAACTTCGGCTCCACCACCTACACCTTGCGGTTCACCGATCTCGACATCGGCTCCAACTTCACCGTCCAAGCCAGCGCCGTCAGCGAGAAAGCCAGCGCCTATACTTCGACGGCCACGGGGTCCCAAGGGGATGCCCCTCTCCAGACGATTCCGGGTGCGGGCACTGTCTACCCCATCATCGTCAATACGCCGCTGCTGCGTGACGAGGACTACGACCAGAGCAAGCAATCGGTCTGCTACCTGACGGCCGGCACGCTGGGCTTCAACTTCGACGGCGCGACGATCTTCCTCAACGACGGGATCGACGCGATCCCGCTCGCGGTCATCGGCAAGGACACGGTAACGGGCTCGACGCTGAACGCACTGCCATACACCACGGCCTACGAGGCCATGGATGAGAAGTCGATCCTCAAGGTCATCCTCAACAGCACCGACGAACTGGAATCGGTGACACAGGAAGACTTGCTCAACACCAATGCCAACGCGGCGCTGGTGGGCAACGAGGTGATCCAGTTCCGCACCGCCACCCAGCAGACAGACGGCTCGTGGTGGCTGACCGGGCTGCGCCGGGCGCGCCGGGGCACGAACTACGGGCTCAAGGGACACGCCGTGGGCGAGCGCTTCGTGCTGCTCGATGCCGAAGCGATCGGCCTGTTCGAGCGTCCACCCGAGCATTACAACACCTCGGCCAACTTCCGGGCAGCGGTGTTCGGCGACGACGTGTCGGACAACAAGGACTATTTCCACGAACTCAAGCCGCGCGACCTCCAGCCCTACACCCCGGAGGACGTGAAGATCACCGACGACGGCACCACGGTGACGATCACCATGGCACGCCGCTCGCGCGTGACGGCTCCGATGCGGGACGGGTTCAGTGTCATCCACTACAAGGAAGGCGACAAGCTGGCCGCCAAGGTCTCCTACAACGTCTGGGCCGGGTTTGACCTGACCTCGGCCGGGCTCGATGTCGGCGAGGTCTCCGGCGAGACGAGCGTGACTGGATCGGTCCCCTTGTTCGACGGTAACGGACAGGACCTGCCGATCGAGATCAGCTTCCCGCTCGCGAGCCTGACTCACCCGACCAAGGTCGGCCAGCAGGACAAGTTCCTGATCCGGATCACCGAAGACGGTATCGCCGAAGGCATCCCGAAGTGGATCGAGTTCCAGCGCCTCGGACAGGGCCGATGGAACAAGACCGATTTCTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b30ea360cfe74220b35c102b5259a0da5a7fdb6ad313da507c76c452b4c10d34
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6700
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50