Protein

View in Explore
Genbank accession
AVR55728.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,95
Protein sequence
MPPVTRLGDIALGHSCYPPSPTIEASSNVFANSIAVHRLGDKIQPHACPGTPPHDRNSSSGSASVFTNSKATCGIGDGVSCGGIVAQGSNNVFRG
Physico‐chemical
properties
protein length:95 AA
molecular weight: 9603,59510 Da
isoelectric point:7,73865
aromaticity:0,04211
hydropathy:-0,16842

Domains

Domains [InterPro]
cd14737
STR
2–95
cd14737
G3DSA:2.60.200.60
STR
3–94
G3DSA:2.60.200.60
IPR008727
STR
13–86
IPR008727
AVR55728.1
1 95
Architecture
STR
STR 2-95
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVR55728.1
1 95
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,1374
Central domain 85 84 1 0,0139
C-terminal 85 95 10 0,9518
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-84
C-terminal
85-95

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CP39
[NCBI] 		2136799 No lineage information
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVR55728.1 [NCBI]
Genbank nucleotide accession
MH107028 [NCBI]
CDS location
range 48355 -> 48642
strand -
CDS
ATGCCACCAGTAACTAGATTAGGAGATATAGCATTAGGGCATAGTTGTTATCCGCCTTCGCCTACAATAGAAGCAAGTTCTAATGTTTTTGCAAATTCAATAGCTGTTCATAGATTAGGTGATAAAATACAACCACATGCATGTCCTGGTACACCACCTCATGACAGAAATAGTTCAAGTGGTAGTGCAAGTGTTTTTACAAATTCAAAAGCTACTTGTGGTATTGGTGATGGGGTTAGCTGTGGTGGAATAGTCGCACAAGGCTCAAATAATGTATTCAGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dd41828cf4ea59bb28cac2781e7aa70d199f12d9fb2df288c432f5ebd840029e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9548
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification, CP39 whole genome analysis and application of Campylobacter jejuni 11168 phage Song,Z., Huang,J., Tong,Y. and Zhao,F. 2022-02-26 — GenBank