Protein

View in Explore
Genbank accession
QBP33145.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,85
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAVGEIQISALPQASLPIDMSDIFHLKQGIEDKRCTLEQLLAPHASLKNNPHGVTKSQVGLSSVINALQLVAANNLSDVVSVEEARTNLGILSSDEVNALIQAHIDDKNNPHNVTKIQVGLGNIQNWTYTNSYSEDADKYASARAVNALYRAIQNSYPIGTIHLSVNPANPATYLLCGGTWELVSKGRSLVGYDSDERPVESVFGSSTVSLTQNNIPSHTHSVYLTGGGHTHGATVSISSFDYGSKNTSSYDYGSKATTDGGNHAHNVNGSVSSAGNHSHRIPLRGNDRPGSNGITASSDAGVGNASYTDFDGVHTHTFNVNSSAAGNHNHSVYIGAHSHSVAIGAHSHSGTVTVQSSEHTHSGTTGAFGSGQAFNIEQPSYVVYVWKRTA
Physico‐chemical
properties
protein length:391 AA
molecular weight: 41265,52320 Da
isoelectric point:6,21565
aromaticity:0,06394
hydropathy:-0,35806

Domains

Domains [InterPro]
DC_1039
STR
1–391
DC_1039
IPR051934
Unmapped
128–359
IPR051934
IPR053827
ATT
154–268
IPR053827
QBP33145.1
1 391
Architecture
STR
ATT
STR
STR 1-153 | ATT 154-268 | STR 269-391
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBP33145.1
1 391
Domain Start End Length (AA) Confidence
N-terminal 1 206 206 0,6838
Central domain 207 380 175 0,0981
C-terminal 381 391 10 0,9972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-206
Central
207-380
C-terminal
381-391

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Silverhawkium
[NCBI] 		2530185 Uroviricota > Caudoviricetes > Andersonviridae > Mooglevirus > Mooglevirus silverhawkium
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBP33145.1 [NCBI]
Genbank nucleotide accession
MK562505.1 [NCBI]
CDS location
range 38664 -> 39839
strand -
CDS
ATGGCAGTTGGTGAAATTCAAATTAGTGCGTTACCTCAAGCTTCCTTGCCAATTGATATGAGTGATATCTTTCACTTAAAGCAAGGTATTGAGGATAAACGCTGCACATTAGAGCAGTTACTTGCACCTCACGCATCACTTAAAAATAACCCTCATGGAGTTACAAAGTCTCAAGTTGGTCTGAGTAGTGTTATTAACGCCCTGCAATTAGTTGCGGCAAATAACTTATCAGATGTGGTTAGTGTTGAAGAGGCAAGAACAAACTTAGGAATCCTTTCTAGTGATGAAGTGAATGCACTTATTCAAGCTCACATTGATGACAAGAATAACCCTCACAACGTTACTAAAATTCAAGTTGGTCTTGGAAATATCCAAAACTGGACTTACACAAACTCTTACTCTGAAGATGCTGACAAATATGCTAGTGCAAGGGCTGTTAATGCTCTGTATAGAGCTATTCAGAATAGCTACCCAATTGGTACTATTCACTTATCAGTTAACCCTGCAAACCCAGCTACATATTTACTTTGTGGTGGTACTTGGGAGTTAGTTTCTAAAGGAAGGTCACTGGTTGGTTACGATTCTGATGAAAGACCTGTAGAGTCTGTATTTGGTTCTTCTACGGTTTCACTTACACAGAACAACATCCCAAGTCACACACACTCGGTGTATTTAACTGGTGGTGGACATACTCACGGAGCAACGGTCAGTATTTCAAGTTTTGATTATGGTAGCAAGAACACCTCAAGCTACGACTACGGTTCTAAGGCAACAACTGACGGTGGTAATCACGCTCACAATGTTAATGGTTCTGTAAGTAGTGCTGGTAATCACAGTCACAGAATCCCGTTGCGTGGTAATGACAGACCCGGCTCTAATGGTATCACAGCTTCTTCTGATGCTGGTGTTGGTAATGCTTCCTACACTGATTTTGACGGTGTTCATACACATACATTCAACGTCAACTCTTCAGCAGCAGGTAACCACAACCACTCTGTGTATATTGGTGCTCACAGTCATAGTGTTGCAATTGGTGCTCATAGCCACTCTGGTACAGTAACTGTACAGTCTTCTGAGCATACACACTCAGGTACAACTGGTGCATTTGGTTCTGGACAAGCATTTAATATTGAACAACCATCTTATGTTGTATATGTCTGGAAGAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
22a934480cd6619f8c8fbe45324a2755c6d5d25b4ba3f5fee572f6b9629b6bf8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7267
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A cornucopia of Shigella phages from the Cornhusker state Doore,S.M., Schrad,J.R., Perrett,H.R., Dover,J.A., Schrad,K.P., Dean,W.F. and Parent,K.N. — — GenBank