Protein

View in Explore
Genbank accession
AJE28023.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MRDLNRLDDLLQGYEFMKKINDNWEIIENGLNLSDYEIEHLRKRITNLVIASGGNSSNEVVDLRVSKLQNKIFELAKDRLDSDLDSLADSLKNMMTRITSIELTNEQVLYMLNRLYGLDAGSIEVYVDSVSGDDTAGTGEKNKPFKTINKATMNFPRVFNSNTLRLWINPGRYDEDVIIPPLSGVTLYILSSNYETVDPAAGPTTCQIRSISVSDTSGYIYIAGIEQTNTAGTTKNYFIKAIRCGFVRITKCRMAFNTKAIDPFTAVFIDACSADVNGCYFASQNVDVRGYNTARVEVQNTTHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLSGGGVVRT
Physico‐chemical
properties
protein length:342 AA
molecular weight: 37892,27360 Da
isoelectric point:5,17675
aromaticity:0,08480
hydropathy:-0,26550

Domains

Domains [InterPro]
DC_1253
STR
1–336
DC_1253
G3DSA:3.30.1910.20
RBD
122–177
G3DSA:3.30.1910.20
IPR011050
STR
124–305
IPR011050
AJE28023.1
1 342
Architecture
STR
STR 1-336 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AJE28023.1
1 342
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,8854
Central domain 159 331 174 0,9601
C-terminal 332 342 10 0,6509
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-331
C-terminal
332-342

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage vB_LmoS_188
[NCBI] 		1591072 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Listeria monocytogenes
[NCBI] 		1639 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AJE28023.1 [NCBI]
Genbank nucleotide accession
KP399677 [NCBI]
CDS location
range 15951 -> 16979
strand +
CDS
ATGAGAGATTTAAATAGATTAGACGATTTATTGCAAGGATATGAATTTATGAAAAAGATAAATGATAACTGGGAAATAATCGAGAATGGATTAAATTTATCTGATTATGAAATAGAACATCTGCGAAAAAGAATTACAAATTTGGTTATTGCATCCGGTGGTAATTCTAGCAATGAAGTTGTTGATTTAAGGGTTTCTAAGTTACAGAATAAAATATTTGAATTAGCGAAAGATAGATTAGATAGTGACTTAGATTCTCTTGCAGATAGTTTAAAGAACATGATGACGAGAATAACGAGTATTGAACTAACAAATGAGCAAGTATTATATATGCTAAATCGTCTGTATGGTCTGGATGCTGGTTCAATTGAGGTCTATGTGGATTCCGTTTCAGGGGATGATACTGCAGGGACTGGAGAAAAAAATAAGCCATTTAAAACAATTAACAAAGCTACCATGAATTTCCCACGTGTATTTAATAGTAATACATTACGCTTGTGGATTAATCCTGGACGCTATGATGAAGATGTGATTATACCGCCATTATCAGGTGTAACATTATATATTCTATCTTCTAATTATGAAACAGTTGATCCTGCGGCTGGTCCTACTACTTGTCAAATCAGAAGTATTTCAGTATCTGATACATCTGGATATATTTATATTGCTGGAATAGAACAAACAAATACTGCAGGAACAACGAAAAACTATTTTATCAAGGCTATACGCTGCGGATTTGTAAGGATTACAAAATGCAGAATGGCTTTCAATACTAAAGCGATAGACCCGTTTACAGCCGTATTCATAGATGCTTGTTCTGCTGACGTTAACGGTTGTTACTTCGCTTCGCAAAACGTCGATGTTCGCGGTTATAACACTGCAAGAGTTGAAGTGCAAAACACCACACATGGAGCAAAAAGCGCAATCGGTTTGTATCCTCAAAGTGCCGATATTTTCAATCTCAATAGCGGTACCTGGGAAGCTGACACGCCTACGAAACTGAGCGGCGGGGGAGTGGTTAGAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0405d6080e6325b5dad1a363c59df661de2bf40c44c827fe42561c1b83f097c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8486
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of vB_LmoS_188 and vB_LmoS_293, Two Bacteriophages with Specificity for Listeria monocytogenes Strains of Serotypes 4b and 4e Casey,A., Jordan,K., Coffey,A. and McAuliffe,O. 2015 25858822 GenBank