Protein

View in Explore
Genbank accession
QDF14265.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Physico‐chemical
properties
protein length:230 AA
molecular weight: 22770,65590 Da
isoelectric point:5,18095
aromaticity:0,05652
hydropathy:0,37957

Domains

Domains [InterPro]
DC_0494
STR
1–229
DC_0494
IPR021251
STR
22–108
IPR021251
QDF14265.1
1 230
Architecture
STR
STR 1-229 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dinoroseobacter phage vB_DshS-R4C
[NCBI] 		2590919 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dinoroseobacter shibae
[NCBI] 		215813 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDF14265.1 [NCBI]
Genbank nucleotide accession
MK882925.1 [NCBI]
CDS location
range 17285 -> 17977
strand +
CDS
ATGCCGACCCCCTTCCTTGCCCTGCCCCTTATTGCCGAGGGGCAGGCCGGACAGCATGTCACCCACAACGAGGCGCTTGACATGATCGACGCGCTTGCCCCGCGCGTGGTCCTGTCCGATAGCCTGGCGACCCCACCCCCTGCCCCGCCGGATCGGTCCGCCTGGATCGTGCCGCCCGGCGGGTCCGGTTTTGGCGGTGCCGGGCCGGGTCAGATCGCCCTCCGTCTGGGCGGTGTCTGGCACGCCATAACCCCCGCCCAGGGCGCGCGCTGGCGCGTTCTGGATCGCGGCGCCGCGGTGATCTGGTCCGGCACCTCTTGGCGCCCGGCGGACGTGTCCGGCGCCCTGGGGTCCACCCTGGGCCTTGCCACTATCGAGGCCACCGTGACCGCCACCGGCCCCTCGGTCACCGCCCCCGCCCTTATCCCGCCCCGTGCAATCGTTCTGGGTGTCACAAGCTGGACCGTCCAGGCGGTGACCGGCGCCACTTCGTACCGCGTAGGGGTGCCCGGTGAGCCCGATAAATTCGGGGCCAGCCTTGGCGCCGCCCCCGGATCATCGAATATCGGGGTCGTCGGTCCCTTCGCAACCTATGCGCCGACTGACGTGGTGGTTACCGCCGAGGGCGCGGATTTCACCGGCGGCACCATCGGCCTTGCTGCAAGCGTGATCCTTCCGGGGGCGCCGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
95d624edca23e4cab9f05977c3fbfe446face1197c6376683934f9d7c5e0fc5e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9425
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A newly isolated roseophage represents a distinct member of Siphoviridae family Cai,L., Jiao,N. and Zhang,R. 2019 31694663 GenBank