Protein

View in Explore
Genbank accession
YP_010081553.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MDSTINGKTVHINNPLDLIGLGRREIEFNIHKADYWEMFKETMQVPTMKRGGRKNLLKGGWVFVDPFNQGRDLWTKDYFTKSGGTVWQTFGANGDIFDSGTYESGYYGFKCPSNKNDEDYIIGNQLSFLQAGKTYTLQWDMKRTTPYIKGDIQSFIGAGASDWTFVDTSKPFYVNGSLHPSGPDGFVSWNSFIDSEDTSWHRCTIIFTCKSPITDLSKRTIRWRAKKDSSWKVKNIMMFDGSELLGTDFRLHEQEYYDWTFYEGRQGMREVSANFGFYYSEDYAFCSAFKVNIHKGFETRGFNPVTQEFECKAEVENFAQIVNPTIKYYQDIKQIPDNVNWNNTIIYNPKPNGIDYLQCKAKGNYMSLYKVRDDNYSSYVPKRWQSTFFDSVPSSKWLYGGYCYTGTLQTYEIEN
Physico‐chemical
properties
protein length:415 AA
molecular weight: 48212,36320 Da
isoelectric point:6,34462
aromaticity:0,16627
hydropathy:-0,65253

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010081553.1
1 415
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,0838
Central domain 249 404 157 0,4963
C-terminal 405 415 10 0,9307
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-404
C-terminal
405-415

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage PC_S1
[NCBI] 		2675265 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010081553.1 [NCBI]
Genbank nucleotide accession
NC_055018 [NCBI]
CDS location
range 19925 -> 21172
strand +
CDS
ATGGATAGTACAATAAACGGTAAAACGGTACATATAAACAACCCGTTAGACCTTATAGGCTTAGGACGTAGGGAAATCGAGTTTAACATTCATAAAGCAGATTATTGGGAAATGTTCAAAGAAACTATGCAAGTCCCTACAATGAAACGCGGAGGACGTAAAAACTTGCTTAAGGGTGGTTGGGTATTTGTTGACCCTTTTAATCAGGGTAGGGATTTGTGGACTAAAGACTACTTCACAAAATCAGGCGGAACGGTATGGCAAACTTTTGGAGCTAACGGAGATATTTTTGATTCAGGTACTTATGAAAGTGGGTATTATGGTTTTAAGTGTCCTAGTAATAAAAATGATGAAGATTACATTATTGGCAATCAACTGTCTTTTTTACAAGCAGGCAAAACTTACACTTTACAATGGGATATGAAGCGAACAACTCCTTATATAAAAGGAGATATACAAAGCTTCATAGGAGCAGGAGCAAGTGACTGGACTTTTGTAGACACAAGTAAACCGTTTTATGTCAATGGTTCTTTGCATCCATCAGGTCCTGACGGTTTCGTTAGTTGGAATAGTTTCATTGATTCAGAAGATACTTCATGGCATAGATGTACAATCATATTCACTTGTAAAAGTCCTATAACTGACTTGAGTAAACGAACCATACGTTGGAGAGCTAAAAAAGATAGTTCTTGGAAAGTGAAAAATATTATGATGTTTGATGGTTCTGAACTATTGGGGACTGATTTTAGATTACATGAGCAAGAATATTATGATTGGACTTTCTACGAGGGTAGACAAGGAATGCGTGAAGTGTCAGCAAACTTTGGTTTTTATTATAGCGAAGATTATGCTTTTTGTTCAGCATTCAAAGTCAATATACATAAAGGGTTTGAAACAAGAGGTTTTAATCCAGTTACACAAGAATTTGAATGTAAAGCAGAAGTCGAGAACTTTGCACAAATTGTCAACCCTACAATCAAATACTATCAGGACATTAAACAAATACCTGATAATGTGAATTGGAATAATACTATCATATACAACCCTAAACCGAACGGAATAGACTACTTACAGTGTAAAGCTAAAGGGAACTACATGAGCTTGTACAAAGTCAGAGATGATAATTATAGTTCATACGTTCCTAAGCGTTGGCAATCTACATTTTTTGATTCAGTTCCTAGCAGTAAATGGTTATATGGTGGATACTGTTATACTGGTACACTACAAACTTATGAGATAGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5d667d5bf2736770b65fffba92d2d3acbb22a072849088f1970283fc51c2672b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4105
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank