Protein

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Genbank accession
XEN38918.1 [GenBank]
Protein name
long tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MEKFMAKFGQGYVQTPFLSESNSVRFKLSIAGSCPLSTSPAYIKFQDNPLGSQVFSVGLNVRVINPTTGAVVESKSYNFSTENDATSSAFVTYMDTYASNFIFALVTNAKTNFPPEVLAWFTKAGSSVIPLAQQVLNIVDISYSAFYISGKNAIALEHIKYSNKKTSTDYSTPLDVVYDTINDIGATGFPSRTYESSDTFLSAVGGTNNEIKRMPTTSLITPLAGYKLKPGDFLYMKFQLMADADLLAQGTTRLSIRFFKSPSTSPISFKDTNFDGAAGEWKIYEDYVEIPAGADGFTIYCYRTAPVGQGGLRNVIFTEVSCNGSVSKPAEFGINGIRVNYVSESLSAPDIMTLPTQSSTDTGKVFGQEFKEASE
Physico‐chemical
properties
protein length:375 AA
molecular weight: 40795,43360 Da
isoelectric point:5,18340
aromaticity:0,12267
hydropathy:-0,10560

Domains

Domains [InterPro]
DC_0912
STR
1–375
DC_0912
PS52031
LEC
22–193
PS52031
IPR039477
STR
58–128
IPR039477
XEN38918.1
1 375
Architecture
STR
STR 1-375
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XEN38918.1
1 375
Domain Start End Length (AA) Confidence
N-terminal 1 167 167 0,2488
Central domain 168 364 198 0,5375
C-terminal 365 375 10 0,5710
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-167
Central
168-364
C-terminal
365-375

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PNJ-9
[NCBI] 		3239045 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XEN38918.1 [NCBI]
Genbank nucleotide accession
PQ100635.1 [NCBI]
CDS location
range 11493 -> 12620
strand -
CDS
ATGGAAAAATTTATGGCTAAGTTTGGACAAGGATACGTCCAAACGCCATTTTTATCGGAAAGCAATTCAGTACGATTTAAATTAAGCATAGCGGGCTCTTGCCCGCTATCAACATCTCCTGCTTATATTAAGTTCCAAGATAATCCACTTGGGTCCCAGGTTTTTTCCGTTGGATTAAACGTTCGTGTAATAAATCCTACAACAGGTGCAGTAGTTGAATCTAAGTCATATAATTTCTCTACTGAAAACGACGCCACGTCAAGCGCATTCGTTACTTACATGGACACATACGCTTCTAATTTTATATTTGCTCTTGTTACTAACGCTAAAACAAACTTTCCTCCTGAAGTTCTCGCATGGTTTACTAAAGCTGGAAGTTCTGTTATTCCATTAGCTCAACAAGTTTTAAATATAGTGGACATTTCTTATTCGGCATTTTATATTTCTGGTAAGAATGCTATAGCACTAGAACATATTAAGTATAGTAATAAGAAAACTTCAACCGACTATAGTACACCACTTGATGTTGTGTACGACACGATTAATGATATTGGTGCTACCGGCTTCCCTAGTCGTACGTACGAATCGTCAGACACATTTTTATCCGCTGTTGGAGGTACTAATAATGAAATTAAAAGGATGCCTACAACGTCCCTTATTACACCTCTCGCTGGGTATAAATTGAAGCCTGGAGATTTCCTTTATATGAAATTCCAACTAATGGCCGATGCTGATTTGTTAGCACAAGGGACGACACGACTTTCTATTCGTTTCTTTAAATCTCCTTCTACTTCACCTATTTCATTTAAGGATACAAACTTTGATGGGGCCGCAGGTGAATGGAAGATATATGAAGACTACGTAGAAATTCCTGCTGGTGCTGACGGGTTCACGATTTATTGTTATCGTACAGCTCCAGTCGGGCAAGGTGGATTAAGAAACGTTATATTCACTGAAGTATCATGTAATGGAAGCGTTTCAAAACCTGCCGAGTTTGGTATAAACGGTATTCGTGTAAATTATGTTTCAGAATCTTTAAGTGCCCCAGACATAATGACATTACCTACTCAATCTTCAACTGATACTGGTAAGGTATTTGGACAAGAATTTAAAGAAGCGTCAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fbbd4eb5b6a67b1c56725d8f7e0fc2817e08f29bf0d55746344602a271e09612
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6622
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of novel Escherichia coli phage PNJ-9 Fu,K.L., Cui,J.Q. and Tang,F. 2019-10-08 — GenBank