Protein

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Genbank accession
XMR01493.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRMFDYGNIAPEAPKIKKVLCGLDNLYVLYGDGSLYGCGVNSYFQLNVTNTATRNTWILISEGVTDAWAGAYNILYIKGEEFIMHGVTTQLGTGNTMIPLGGLNVTSSFPHISNIKMISIGADTMHYVDASGSIVYGRGMNGNYSLGGGYSTAQSTFVSVINTGANTVLDILGTQNNTLILTSNGELLGCGSSEYGSLGVSSGQYTTLVSRLTSVKLFGGNSTGTLAYSASNIYNAGWQYVGQLGNGITTNTLLYPFAFNSTTIDSKIHKISKSSTTSRVNMYATTEGKIYSTGEFGRNGSGGSLSRFTNTLTLDNYNPEKSALYTCAHFSIVFDGNNQIYACGSFLYVPGPITTNSWSAITMPK
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39396,85180 Da
isoelectric point:6,93847
aromaticity:0,11111
hydropathy:0,00325

Domains

Domains [InterPro]
DC_0433
ATT
1–120
DC_0433 IPR009091
IPR009091
STR
7–171
IPR009091 DC_0436 DC_1160
IPR009091
STR
16–261
IPR009091
IPR051553
Unmapped
18–315
IPR051553
DC_0436
RBD
90–221
DC_0436
IPR009091
STR
210–352
IPR009091
XMR01493.1
1 369
Architecture
ATT
STR
ATT 1-120 | STR 121-369
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01493.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 222 222 0,0666
Central domain 223 358 137 0,3483
C-terminal 359 369 10 0,7465
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-222
Central
223-358
C-terminal
359-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey3
[NCBI] 		3375710 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01493.1 [NCBI]
Genbank nucleotide accession
PQ471515 [NCBI]
CDS location
range 345923 -> 347032
strand -
CDS
ATGTTACCATTTGTTAGAATGTTTGATTACGGGAATATTGCACCTGAAGCTCCAAAGATAAAGAAAGTACTGTGCGGTCTTGATAATTTGTACGTCCTCTATGGCGATGGCTCACTTTATGGTTGTGGGGTTAATTCGTATTTTCAGTTAAACGTTACAAATACAGCAACAAGAAATACTTGGATATTAATTTCAGAAGGTGTTACTGATGCATGGGCTGGGGCGTACAATATTCTTTATATCAAGGGTGAAGAATTCATAATGCATGGAGTTACCACACAATTAGGCACAGGAAATACTATGATTCCGTTGGGTGGTTTGAATGTTACTTCTTCATTTCCACATATATCTAATATTAAAATGATATCAATTGGTGCAGATACAATGCACTACGTTGATGCTAGTGGTTCGATTGTTTATGGTAGAGGCATGAATGGTAACTATTCACTCGGTGGTGGGTATTCCACGGCTCAGAGTACTTTTGTTTCAGTTATTAATACCGGAGCTAATACAGTCCTTGATATATTGGGTACACAGAATAACACATTAATATTAACATCAAATGGTGAACTTCTCGGTTGTGGGAGTAGTGAGTATGGTTCACTTGGCGTAAGTTCAGGACAGTATACTACACTAGTAAGCAGGTTAACCAGTGTTAAACTGTTTGGTGGTAACAGTACTGGTACTCTTGCTTATTCAGCCAGCAATATATACAACGCAGGTTGGCAGTATGTTGGTCAACTTGGTAACGGTATTACAACGAACACACTATTATATCCATTTGCATTTAACTCCACTACTATTGATAGTAAGATACATAAAATATCAAAATCAAGTACAACTTCACGTGTTAATATGTACGCAACAACCGAAGGAAAGATATATAGTACTGGTGAATTTGGTAGAAATGGTTCTGGTGGTAGTTTGAGTAGATTCACCAATACACTAACTTTAGATAATTACAACCCAGAAAAATCAGCATTATACACATGTGCACATTTTAGTATAGTATTTGATGGTAATAATCAAATTTATGCTTGTGGTTCTTTTTTGTATGTGCCAGGTCCTATTACCACGAACTCATGGTCTGCAATTACAATGCCGAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
43181ace47731049fe7ca8e36478503eae133ec8a012a118eb046009870dda68
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8913
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank