Protein

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Genbank accession
AHK11866.1 [GenBank]
Protein name
dimodular nonribosomal peptide synthetase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,69
Protein sequence
MALQTFSVPAVGGLDLVSAPQVLSQKPGAALVLNNYEALAEGGYRRINGMVPYGDIPDVISKEVIRGIAYYKGIVAVIGQYVLHSPDGATWNVVNKKNVSNTSSKGLTALDLIPRMGTGPVEFTVINQGDVDVITITDDMDAPAELKVVGNSYTYTISDNADVVGYRYSTKYQDHVVYAGSRGKPGSIAVSSRFKPLDFTSAGAWVAQVSDEIVGLHTFRDYLYIFCRNSIYRVINLESQKDVAIRPVTTKVGCIDGRSIQEIGGDILFLADDGLRYLGATERIDDVSLNLVSALVRPLINSVAPNQGPVSSVVIPSKAQYRLFFTTTLGKRIGLIGTLGADGQFSWSTTDDMWVDALTMTTEGEGETVYHIGSPTTGNKRVYYHDRGNHFDTSEIKGTWAVPHFNMGDSAVRKTLHFLDAYLEAEDKASIELTIKYDHEDPKVMQPEAFYLEPVVQAARYGEAIYGQATYGAIKFPLDDIFLEGSGKWMQLTFQDNDVDNSPYIIRGYDLQFTPSGRI
Physico‐chemical
properties
protein length:519 AA
molecular weight: 56891,52290 Da
isoelectric point:5,04568
aromaticity:0,10019
hydropathy:-0,12158

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AHK11866.1
1 519
Domain Start End Length (AA) Confidence
N-terminal 1 371 371 0,9547
Central domain 372 508 138 0,2430
C-terminal 509 519 10 0,6156
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-371
Central
372-508
C-terminal
509-519

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CHOED
[NCBI] 		1458716 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHK11866.1 [NCBI]
Genbank nucleotide accession
KJ192399 [NCBI]
CDS location
range 4294 -> 5853
strand +
CDS
ATGGCATTACAAACATTCTCTGTCCCTGCTGTTGGAGGGTTAGATTTAGTTAGTGCACCTCAGGTTCTCTCTCAGAAGCCCGGGGCTGCCTTAGTATTAAACAACTATGAAGCCTTAGCTGAAGGTGGATATCGAAGAATTAACGGAATGGTTCCCTATGGGGACATCCCGGATGTAATCTCTAAGGAAGTAATACGAGGCATAGCTTACTATAAAGGCATTGTGGCTGTGATAGGACAATATGTGCTTCACTCACCTGATGGGGCTACATGGAACGTAGTTAATAAAAAGAATGTGAGTAACACCTCATCTAAAGGTTTAACAGCTTTAGACCTAATCCCTAGGATGGGCACAGGCCCTGTAGAGTTCACAGTGATTAACCAAGGGGATGTTGATGTAATAACAATCACTGATGATATGGATGCTCCTGCTGAGCTTAAGGTAGTGGGTAATAGTTATACCTACACAATATCAGATAATGCTGATGTAGTAGGTTACAGATACAGTACTAAATATCAGGACCACGTGGTTTATGCAGGTTCCCGTGGGAAGCCCGGTAGTATCGCTGTGAGTTCCAGATTTAAACCTTTGGACTTCACAAGTGCTGGTGCATGGGTAGCCCAAGTATCTGATGAGATAGTAGGACTCCACACATTCCGTGATTACCTATATATCTTCTGTAGAAACTCAATATATCGTGTGATTAACTTGGAGTCCCAGAAGGATGTAGCGATTCGCCCGGTAACCACCAAAGTGGGTTGTATTGATGGCCGCTCTATTCAAGAGATTGGTGGTGATATCTTATTCTTAGCTGATGATGGTCTGCGATATCTAGGTGCAACAGAACGTATTGATGACGTCTCCTTGAACCTTGTGAGTGCCTTAGTACGCCCATTGATAAACAGTGTAGCCCCTAATCAGGGCCCTGTTAGTTCAGTAGTTATACCAAGTAAAGCTCAATATCGTCTATTCTTCACTACTACTTTAGGTAAGAGGATAGGTCTCATTGGGACCTTAGGGGCCGATGGGCAATTCTCATGGTCAACAACTGATGACATGTGGGTAGATGCTTTAACCATGACAACTGAAGGTGAGGGAGAAACAGTCTATCATATAGGTTCACCTACCACAGGTAATAAGAGAGTTTATTATCATGATAGAGGTAATCACTTTGACACCTCGGAAATCAAAGGTACATGGGCCGTCCCTCATTTCAACATGGGTGACTCAGCAGTTCGTAAGACCCTGCATTTCCTTGATGCTTACTTAGAGGCTGAAGATAAAGCGTCTATTGAACTAACTATCAAGTATGACCATGAGGACCCTAAGGTGATGCAGCCTGAGGCTTTCTATCTAGAGCCTGTGGTACAAGCAGCTAGATACGGTGAAGCTATCTATGGACAAGCCACTTATGGAGCCATTAAGTTCCCATTGGATGACATATTCCTAGAGGGCTCAGGTAAATGGATGCAGCTAACATTTCAGGATAATGATGTAGATAATTCTCCTTATATTATTCGAGGGTATGACCTACAATTCACTCCTTCAGGAAGGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
92fd0fd8d00a7cbcad888d3b3db14db08292ef14ca800e83fe964d48b42b2e4d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8586
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio anguillarum bacteriophage CHOED of the family Podoviridae, successfully used for phage therapy in aquaculture Romero,J., Gajardo,F., Higuera,G., Castillo,D., Middleboe,M., Garcia,K., Ramirez,C. and Espejo,R. 2014-08-28 — GenBank