Protein

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Genbank accession
ANM45889.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MKNNMIVTGRKGGSSKPKTPKEMEDNLISINKIKVLLAVSDGECDPDFSLKDLYLNDVPVIAPSGEENYKGIIAEFRPGTQTQDYIKGFTDTASEITVSRVIKADNPYIIAVTNKTLSAIRIKILAPRMVYTESDGDMVGTKVEYAVDMAIDGATYQQVFKDTIDGKTMSGYDRSKRVDLPAFNDQVLLRVRRITADSTDARRVDEIQVQSYAEVIDAKFRYPLTGLVYVEFDSEMFPQMPNISVKKKWKLVNVPSNYNPVLREYVGTWDGVFKKAWTNNPAWVLYDLITNQRYGLDQRELGIAVDKWSLYDAGRYCDQMVPDGKGGTEPRYLCDVVIQSQIEAYNLVRDICSIFRGMSFWNGESLSIVIDRPREASYIFTNDNVVNGSFSYTFASEKSMYTTCNVTFDDEQNMYQQDVEGVFDLEASVRFGHNPTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPMIGDVIAIEDNHWSSGNKLSLSGRAMEVSGLQVFTHFRVDARPGDFIIVNKPDGNPVRRTISNVSADGKTIMLNVGFGFDVKPNAVFAIDRTDVTLQQYVVTQISKGDGSDEFCYSITAVEYDPNKYDEIDYGVNIDDRPTSIVDPDNMQPPKNIRVSSYSRVVQGMSVETMVIGWDKAPYSSTYDVQWRKDNGNWNNVPRTANSEVEIEGIYSGNYHVRVRSISSGDNMSPWSAVVSVGLTGKVGEPATPINLTATDNEVFGIRVKWGMPTGSEDTAYIELHQSPDGTAQNASLLTMIPYPQYEYWHSILPAGFVDWYRIRSVDRIGNVSQWTKFVRGMASDDVDQIMDVIKIDIENSEGFKELAESTIDSANKIREQAQTDIQNALANDYNLIWTRKQNGNRKAEYGKAVELIATETEARVAAIEELRASIGDDIQGQIITLREAIATEEEARVKAVQQLDVKFTNGLASANANIGRLDEAVVNEQQARAQAITSLDTKFTKQVGDLRTETQAAITRVDKAIADEASARATAITQVEAKTTTAQNTANNANQAAGNAQNTANQAAATASQKLDSWVNGTSIGSSYTLKLGVKYNGVDYNAGMNMQLVGTAAAPKAQMLFDVDRFAVGRISGGTLAQFPFVIEGAQVFMQSVFIKDGSITNAKIGNVIQSNNYVAGQTGWKIDKNGNFELNGKAGTGRMVISNNIIQIYDANNRLRVRMGLW
Physico‐chemical
properties
protein length:1200 AA
molecular weight: 132964,79290 Da
isoelectric point:5,11809
aromaticity:0,08583
hydropathy:-0,35867

Domains

Domains [InterPro]
DC_0014
STR
1–1200
DC_0014
IPR053171
Unmapped
4–870
IPR053171 IPR015406
IPR055385
ATT
93–218
IPR055385 IPR032876 IPR036116 Coil
IPR013783
STR
627–720
IPR013783
IPR003961
STR
628–722
IPR003961
ANM45889.1
1 1200
Architecture
STR
ATT
STR
ATT
STR
STR 1-92 | ATT 93-218 | STR 219-340 | ATT 341-488 | STR 489-1200
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ANM45889.1
1 1200
Domain Start End Length (AA) Confidence
N-terminal 1 482 482 0,8753
Central domain 483 1065 584 0,1044
C-terminal 1066 1200 134 0,3613
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-482
Central
483-1065
C-terminal
1066-1200

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_NBD2
[NCBI] 		1852563 Uroviricota > Caudoviricetes > Drexlerviridae > Vilniusvirus NBD2 >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANM45889.1 [NCBI]
Genbank nucleotide accession
KX130668 [NCBI]
CDS location
range 25767 -> 29369
strand +
CDS
ATGAAAAATAACATGATAGTGACAGGCCGGAAGGGTGGAAGCAGCAAGCCGAAAACCCCAAAGGAAATGGAAGATAATTTAATCTCCATTAACAAAATCAAGGTATTGCTAGCCGTTTCAGATGGCGAGTGCGATCCAGATTTCTCGCTGAAAGATCTGTATTTGAATGACGTTCCGGTGATCGCGCCATCCGGCGAAGAGAACTACAAGGGAATCATTGCAGAGTTTCGCCCAGGTACGCAGACGCAGGATTACATTAAGGGCTTCACCGACACCGCCAGCGAAATTACAGTTTCGCGAGTGATTAAGGCCGATAACCCTTACATCATCGCCGTTACCAATAAAACGCTTTCGGCTATCAGAATCAAGATCCTTGCCCCGCGCATGGTATACACCGAATCCGATGGCGATATGGTTGGCACCAAAGTTGAATACGCGGTTGATATGGCGATTGATGGCGCAACTTATCAGCAGGTGTTTAAAGACACGATCGACGGAAAAACAATGTCGGGTTACGACAGAAGCAAGCGCGTAGACCTGCCAGCTTTCAACGATCAAGTGTTGCTGCGAGTTCGCCGCATTACGGCTGATTCAACGGATGCGCGCCGCGTTGATGAAATTCAGGTTCAGTCTTACGCCGAAGTGATTGATGCCAAGTTCCGCTATCCCCTGACGGGTTTAGTTTACGTTGAGTTTGATTCTGAAATGTTCCCGCAGATGCCGAACATTTCCGTTAAAAAGAAATGGAAACTTGTTAACGTTCCGAGCAACTACAACCCTGTTTTGCGCGAATACGTTGGCACATGGGATGGCGTATTCAAAAAGGCGTGGACGAATAACCCAGCGTGGGTGCTGTACGATTTGATCACCAATCAGCGCTACGGACTCGATCAAAGAGAGTTAGGCATCGCGGTTGATAAGTGGAGCCTTTACGACGCAGGCCGATATTGTGATCAGATGGTTCCAGACGGAAAGGGCGGAACAGAGCCGCGCTATCTTTGTGATGTGGTTATTCAGTCGCAGATTGAAGCGTATAACCTCGTGCGCGATATTTGCTCAATCTTCCGAGGTATGAGCTTTTGGAACGGTGAAAGCCTTTCCATCGTGATTGACAGGCCGCGCGAAGCGTCTTACATCTTCACGAATGACAACGTGGTTAACGGTTCATTCTCCTACACTTTCGCCAGTGAAAAGAGCATGTACACCACTTGCAACGTGACGTTTGACGATGAACAAAACATGTATCAACAGGACGTTGAAGGCGTTTTTGATCTGGAAGCCTCCGTGCGATTCGGGCACAACCCGACGAGCATCACGGCGATCGGATGCACCCGCCGAAGCGAAGCAAACCGCCGAGGGCGCTGGATTCTGAAAACGAACTTGCGCAGCACAACGGTTAACTTTGCAACTGGTCTGGAGGGGATGATTCCGATGATTGGCGACGTGATCGCAATTGAGGACAACCACTGGAGCAGCGGCAACAAGCTTTCTTTATCCGGTCGAGCGATGGAAGTTAGCGGCCTGCAGGTGTTTACTCACTTCCGAGTTGATGCGCGCCCAGGTGATTTCATCATCGTAAACAAGCCTGATGGTAATCCGGTTCGCCGCACGATTTCGAACGTATCGGCAGACGGCAAAACGATTATGTTGAACGTTGGTTTCGGGTTTGATGTTAAGCCGAACGCAGTTTTCGCCATTGACCGCACAGACGTTACTTTGCAGCAGTACGTTGTTACGCAGATCAGCAAGGGCGATGGAAGCGATGAGTTTTGCTATTCAATCACGGCGGTTGAGTACGACCCGAACAAATACGACGAAATCGACTACGGCGTAAATATTGATGACCGACCGACAAGCATCGTTGATCCCGACAACATGCAGCCGCCTAAAAACATTCGCGTGTCGTCTTACTCGCGAGTTGTCCAGGGCATGAGTGTTGAAACGATGGTTATCGGCTGGGATAAGGCACCGTATTCGAGCACTTATGATGTGCAATGGCGCAAGGATAATGGCAACTGGAACAACGTTCCACGAACCGCAAACAGTGAAGTTGAGATCGAAGGAATTTACTCCGGCAACTATCACGTGCGCGTGCGGTCAATCTCAAGCGGCGATAACATGTCTCCGTGGTCTGCGGTTGTATCGGTTGGCTTGACGGGCAAAGTTGGTGAGCCAGCAACACCAATTAACCTGACGGCTACGGATAACGAAGTGTTTGGGATTCGCGTTAAGTGGGGAATGCCTACTGGATCAGAGGACACGGCTTATATTGAGTTGCACCAATCGCCTGACGGCACGGCGCAGAATGCAAGCCTGTTAACTATGATTCCTTACCCGCAGTATGAATACTGGCACTCAATACTTCCGGCTGGCTTCGTTGATTGGTATCGAATCCGCAGTGTTGACAGGATCGGGAATGTTTCGCAATGGACAAAGTTTGTGCGCGGCATGGCCTCTGATGACGTTGATCAGATCATGGACGTAATCAAGATTGACATTGAAAATTCCGAAGGGTTCAAGGAGCTTGCAGAAAGCACTATCGACAGCGCAAACAAGATTCGTGAGCAGGCGCAAACTGATATTCAGAACGCACTGGCTAACGATTACAATCTGATCTGGACTCGCAAGCAGAACGGCAACCGCAAGGCCGAATACGGCAAGGCAGTTGAGCTTATCGCTACAGAAACAGAGGCGCGAGTTGCAGCAATCGAAGAGCTTAGGGCGAGCATTGGCGACGATATCCAGGGGCAGATCATCACGCTACGCGAGGCGATCGCAACCGAGGAAGAAGCGCGAGTGAAAGCGGTTCAACAGCTTGATGTGAAATTCACAAACGGCCTGGCAAGTGCAAACGCTAACATCGGCAGGCTTGATGAGGCGGTTGTTAACGAGCAGCAGGCGCGGGCGCAGGCGATCACCTCGCTTGATACGAAATTCACAAAACAGGTTGGCGATCTGCGAACTGAAACGCAAGCGGCTATCACCCGCGTTGACAAGGCAATTGCAGACGAGGCGAGCGCGCGAGCAACGGCGATCACTCAAGTTGAAGCCAAGACAACAACGGCGCAGAATACCGCGAACAACGCTAACCAAGCGGCGGGAAATGCACAGAATACCGCTAACCAGGCGGCAGCAACGGCAAGCCAAAAGCTTGACTCCTGGGTTAATGGCACGTCGATTGGCTCAAGCTATACGTTGAAGCTGGGCGTTAAGTACAATGGGGTTGACTACAACGCCGGAATGAATATGCAGTTGGTTGGAACGGCAGCGGCACCGAAAGCGCAAATGCTGTTTGATGTTGACCGCTTCGCAGTGGGCAGAATCAGCGGCGGAACGCTGGCGCAATTCCCGTTTGTTATCGAAGGCGCGCAAGTATTCATGCAGTCTGTTTTCATCAAAGACGGCTCGATCACAAACGCGAAAATCGGTAATGTGATTCAGTCAAACAACTATGTTGCAGGTCAGACAGGTTGGAAGATTGACAAAAACGGTAACTTTGAGCTTAACGGCAAGGCTGGCACAGGCCGGATGGTAATTAGCAACAACATCATCCAGATCTATGACGCAAACAACCGCCTTCGTGTTCGTATGGGATTGTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb81adfb45f70c002a5cfc28932677ee0cfe7f87e20b06c74e8424941b7670ce
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3073
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome of E. coli phage vB_EcoS_NBD2 Truncaite,L., Kaliniene,L., Zajanckauskaite,A. and Meskys,R. 2011-08-10 — GenBank