Protein

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Genbank accession
AGH56355.1 [GenBank]
Protein name
OMP1 protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRKFLPIVMLLMAAPAHADITHRLSSSVQLQVNSAATQATRLGNSYAISGNNVNTTDGTTTGTVAAGTITSGVYAPGSIDATQATAGEAFSFSTSFTQADAIPTSAATTGEIQNFGIMTSNAAGTAGDLAGTIDSAGSMALTAGGAGTSAIGQFSSEIIIK
Physico‐chemical
properties
protein length:161 AA
molecular weight: 15925,49590 Da
isoelectric point:4,73500
aromaticity:0,04969
hydropathy:0,22298

Domains

Domains [InterPro]
IPR046285
STR
9–153
IPR046285
IPR046285
STR
20–153
IPR046285
AGH56355.1
1 161
Architecture
STR
STR 9-153 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56355.1
1 161
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0018
Central domain 11 150 141 0,0065
C-terminal 151 161 10 0,9837
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-150
C-terminal
151-161

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage Syn2
[NCBI] 		536473 Uroviricota > Caudoviricetes > Pantevenvirales > Pontusvirus > Pontusvirus syn19
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56355.1 [NCBI]
Genbank nucleotide accession
HQ634190 [NCBI]
CDS location
range 69570 -> 70055
strand -
CDS
ATGCGTAAGTTTTTACCTATCGTTATGTTGTTGATGGCAGCGCCAGCACATGCTGATATCACCCATCGACTCTCTTCTAGTGTTCAACTGCAAGTGAATTCAGCAGCAACACAAGCAACACGCCTCGGAAATTCCTATGCAATTTCAGGCAATAATGTGAATACTACTGACGGAACGACAACAGGAACAGTTGCCGCTGGCACTATTACCTCTGGAGTCTATGCTCCTGGTTCTATTGATGCAACCCAAGCAACTGCTGGGGAAGCATTCTCCTTCAGCACCTCATTCACACAAGCTGATGCCATTCCTACAAGCGCAGCGACTACTGGTGAAATTCAGAACTTCGGCATCATGACCAGTAATGCAGCTGGAACTGCTGGCGACTTAGCTGGAACAATCGATTCTGCAGGCAGTATGGCACTGACGGCTGGCGGCGCAGGAACATCTGCAATCGGACAGTTCTCTAGTGAAATCATCATCAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7410d9125cd01fc78c35ece024211f56d39003263c84207b7cefe0a3b5f4b823
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3580
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank