Protein

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Genbank accession
AMO44112.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
Protein sequence
MIWSLLMSSVSASAVVAGGIPTPSALDFSTAFATFTPAAGWGMVRRNDSYSGPACRVRDNANPGTFVDIYFDVDGYVTDAIPYGANTRVSILYDQFGTEDLVETGNVSVKANDGTFPTWRLSFIDNNGHLESTSTVADTPSWAINTPLWGANIVRPVDAAGLRNVFGVEGDITYMVYGLWLDGPDLHWRVNGLGATDWADTDWTLNPEVQGTLSSLVSDAAPGGSNAYHNGIKASTIAENPYPILDFSLSTAKLGLGGWSGLANNATVDIIELTVFDGVTMGYYDRLNLIEKLMLVDGTGLPTYAEKFPTDFVLGDAESGSTSISPWLNDSGSIQTVTTSYGIGPYEGLRFFSSAIAAPRSMWQTIAVPTALGGLVDYGMTAEVSFQISSPAAPDVHCIHVNATFEDAYGNPIAGRYSRRFAATTTNTWEAQTAFIPIPVGARVVTVYFEYYQRLAASRTNIDAISVAWVSNPDEVSADRSRTYAVLGASPNAVNVQRQRTYAVFGRHPEILAVNQHRTYVILE
Physico‐chemical
properties
protein length:524 AA
molecular weight: 56419,22820 Da
isoelectric point:4,56948
aromaticity:0,11069
hydropathy:-0,00515

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMO44112.1
1 524
Domain Start End Length (AA) Confidence
N-terminal 1 106 106 0,1040
Central domain 107 308 203 0,6290
C-terminal 309 524 215 0,7767
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-106
Central
107-308
C-terminal
309-524

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage DSS3P8
[NCBI] 		1735562 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ruegeria pomeroyi DSS-3
[NCBI] 		246200 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Ruegeria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMO44112.1 [NCBI]
Genbank nucleotide accession
KT870145.1 [NCBI]
CDS location
range 50007 -> 51581
strand +
CDS
ATGATTTGGTCCCTTCTGATGTCGTCCGTATCCGCGTCAGCGGTAGTAGCTGGTGGAATTCCAACCCCATCAGCACTCGATTTCTCTACCGCGTTCGCGACGTTTACGCCTGCAGCCGGGTGGGGAATGGTCCGCCGCAACGATTCTTACAGTGGACCTGCTTGCCGTGTCCGGGACAATGCCAATCCCGGAACATTCGTGGACATCTATTTTGATGTCGACGGATATGTAACAGATGCCATCCCCTATGGGGCGAATACCCGCGTCTCCATTCTCTACGATCAGTTCGGCACCGAGGACCTCGTCGAGACTGGAAACGTGTCTGTCAAGGCCAACGATGGTACCTTCCCGACTTGGCGCTTGTCGTTCATCGACAACAATGGGCATCTGGAATCAACATCAACCGTAGCCGATACCCCGTCGTGGGCAATCAACACACCCCTCTGGGGAGCGAACATTGTTCGCCCAGTGGACGCAGCAGGGCTGCGTAACGTATTTGGGGTCGAGGGTGACATCACCTATATGGTCTACGGTCTTTGGCTTGATGGACCTGACCTTCATTGGCGCGTCAACGGCCTCGGGGCCACAGACTGGGCAGACACAGACTGGACACTCAACCCAGAGGTGCAGGGAACTCTCTCATCTCTCGTTAGTGATGCAGCTCCCGGAGGCTCTAACGCCTACCATAACGGAATCAAGGCGTCCACCATCGCCGAAAATCCGTATCCGATCCTTGATTTCTCGCTCTCGACGGCAAAGCTCGGACTTGGTGGGTGGAGCGGTCTCGCAAATAACGCGACAGTGGACATCATTGAACTCACTGTGTTTGATGGCGTAACCATGGGGTATTACGACCGCCTCAACCTCATCGAAAAGTTGATGCTTGTAGACGGTACTGGCCTTCCAACATATGCAGAGAAGTTCCCAACGGATTTCGTTCTCGGAGACGCTGAATCTGGGTCTACATCTATTTCACCTTGGCTCAACGACAGTGGATCGATCCAGACTGTAACAACATCGTACGGTATCGGCCCGTATGAAGGACTTCGGTTCTTCAGTTCCGCCATTGCTGCCCCTCGCAGCATGTGGCAGACCATTGCAGTACCTACGGCATTGGGCGGGCTTGTTGACTATGGGATGACCGCGGAAGTGTCATTCCAGATCAGCTCTCCTGCAGCACCTGACGTCCACTGCATCCATGTAAATGCTACATTCGAAGATGCATACGGTAACCCAATTGCGGGAAGGTACTCTCGCCGCTTCGCCGCAACGACAACCAATACATGGGAAGCACAGACAGCATTTATTCCTATCCCAGTAGGCGCGCGCGTCGTCACAGTTTACTTTGAATACTACCAGCGCCTTGCAGCCAGCCGCACAAACATCGACGCTATCTCTGTGGCTTGGGTGTCTAACCCGGATGAGGTCTCCGCTGATCGCAGCCGCACATACGCAGTTCTTGGGGCATCTCCTAATGCTGTCAATGTCCAGCGTCAGCGCACGTATGCGGTATTTGGCCGTCATCCTGAAATCCTTGCGGTAAATCAGCACCGCACCTATGTAATCTTGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5b333bc0f997345b71c302d987203655b2e2f8b11c56d9b484623785bbc212ee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6904
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel CbK-like bacteriophage has been isolated from Rosebacter Zhan,Y., Huang,S., Voget,S., Simon,M. and Chen,F. 2016 — GenBank