Protein

View in Explore
Genbank accession
QDH46486.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MPTFRVRGIGKVGTIKDLPPFELPPEAWSTSNNVRFVGGRVEKMGGMLPVLTTNMPDETPLCVFQKSNTNSVIYGTPTSIYRIDGISHFKISRNLSTTPGQEDFYVYGASPEDRWYYTSLSNSIIMNYKGDNPQGLRPTDDYFVNLPGWGIPSKEGVQKTWRCGRIRAFRNYLIALDMVEDGVELPQRVRWSNVSFVNELPPDWVEDDDKKDGGFNDLTDSIGKIVDGHPLRDSFVVYTDKDTYLMDYVGGVFIFNFRKLFSDSGLLAPNCVAEFEGQHFVVAQDDIFIHNGSSRKPVASGRLKEYLINEISGINSQATQVFSNTSRKEIWITYAGTGSIGADKTGWSCNKAAVWNWEYDTWSFYDLPQVYDINMAPPPETDTLSWDQLCGTEADPPNDSIIPIGCEDVWDSDKWSEDQWQEYGKDFIRRVIYCASKDKCLYLLDTGTEFVDYDSVNKTNNPRPIVAELIRTHLDMDEAVESTRRYKMIRHIVPQFSGTGEVLVFYGGSENSTNPPTWDGYQVYNIEEDVKVDSWSNNRYPAIKFVDSSGGTWSFTGYDIDFIQEGLR
Physico‐chemical
properties
protein length:568 AA
molecular weight: 64479,15240 Da
isoelectric point:4,67321
aromaticity:0,12676
hydropathy:-0,48081

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH46486.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 420 420 0,6055
Central domain 421 557 138 0,1510
C-terminal 558 568 10 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-420
Central
421-557
C-terminal
558-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh_6
[NCBI] 		2591030 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH46486.1 [NCBI]
Genbank nucleotide accession
MK838112 [NCBI]
CDS location
range 14118 -> 15824
strand +
CDS
ATGCCAACATTTAGAGTTAGGGGTATTGGTAAGGTGGGTACTATTAAAGATCTGCCACCATTTGAACTACCCCCAGAGGCATGGTCTACCTCCAATAATGTCAGATTTGTTGGTGGGAGGGTTGAAAAGATGGGGGGTATGCTCCCCGTCTTAACAACAAATATGCCAGATGAAACACCTTTGTGTGTTTTTCAGAAAAGCAACACGAACTCTGTTATATATGGTACTCCTACTTCTATTTACAGAATAGATGGTATTTCACATTTTAAAATAAGTAGAAATCTAAGTACGACCCCAGGTCAAGAAGATTTTTATGTGTATGGGGCTTCACCAGAGGATAGATGGTACTACACCTCCCTATCGAACTCTATCATAATGAATTATAAAGGCGATAACCCTCAAGGACTAAGACCAACGGATGATTACTTTGTCAATCTACCTGGGTGGGGAATCCCTTCAAAAGAAGGTGTTCAGAAAACATGGAGATGTGGTAGAATCAGGGCATTTAGAAACTACCTCATTGCCCTTGATATGGTTGAGGATGGTGTTGAGCTACCTCAGCGTGTAAGGTGGTCTAACGTATCTTTCGTTAATGAGTTACCACCTGACTGGGTTGAGGATGATGATAAGAAAGATGGTGGTTTTAATGATTTAACTGATTCTATTGGTAAAATTGTAGATGGCCACCCGTTAAGAGATAGTTTTGTTGTATACACAGACAAAGACACATATTTGATGGACTATGTGGGTGGTGTCTTTATATTTAACTTCAGGAAATTATTTAGTGACTCAGGTCTTCTTGCACCTAACTGTGTGGCTGAGTTTGAAGGGCAGCACTTTGTTGTTGCTCAGGATGACATCTTTATCCATAATGGATCTTCCAGAAAACCAGTAGCATCTGGTAGGTTGAAAGAGTATTTAATTAATGAAATCTCTGGAATCAACTCTCAAGCTACTCAAGTTTTTTCAAACACCTCTAGAAAGGAAATCTGGATAACTTATGCAGGTACTGGATCTATTGGTGCAGATAAAACTGGTTGGTCTTGCAATAAGGCTGCCGTTTGGAACTGGGAATATGATACTTGGTCATTTTATGATTTGCCACAAGTTTATGATATAAACATGGCTCCGCCTCCAGAAACAGATACATTGAGTTGGGATCAATTATGTGGTACAGAAGCTGATCCACCGAATGATAGCATAATCCCAATTGGTTGTGAGGATGTATGGGATTCTGATAAGTGGTCTGAGGATCAGTGGCAGGAATATGGAAAGGATTTTATTAGAAGGGTTATTTATTGTGCAAGTAAAGACAAGTGTTTGTACTTATTAGACACAGGTACTGAGTTTGTTGACTATGACAGTGTTAATAAAACCAATAACCCTCGTCCAATCGTTGCCGAGCTTATCAGAACTCACTTAGACATGGATGAAGCAGTTGAATCAACGAGAAGATATAAAATGATAAGGCATATAGTTCCACAATTTTCTGGAACTGGTGAAGTCTTAGTGTTTTATGGTGGATCAGAAAACTCTACAAATCCACCAACTTGGGATGGGTATCAAGTCTATAACATAGAAGAAGATGTTAAAGTAGATTCTTGGTCTAATAACAGGTATCCAGCTATCAAATTTGTGGATTCATCTGGTGGCACTTGGTCTTTCACTGGGTACGACATTGATTTTATCCAGGAAGGTTTACGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0d72fc26eb947a4218dcd5c09e329431d30767b30074160ab1bb3adab932d638
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8529
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank