Protein

View in Explore
Genbank accession
QDH46279.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKVTGSFESVYRGVSQQVPQARRSGQMAEQVNMISDPVRGVVRRHGSQALHGFQISGADMNATQLAELARKYTTMPYHCNGKEYELFYSKEGVTGYPGAIPVVAYDKAKQEIMPTVLYGGLANLLTSNGVSSMVNIGKFVFIAVNGFSPTYHFATNMVDTAAQRVGVLWIRNGGFSRTYTLKLTMVDGSVKTITYTTPAATYQGTLNTSDIPYDETKPWLYQQAVANRTNAYNTAVTQHIATATAAIAPDAIAREMYTRMMAAGIAANNVAADGAYVLWNQNANVAFASLDDGGDDSYARVNVHSVDTVEKLVPKAYNGMLMKIAAKRSNNKDAFYMRATTKDGSMFGEVVWKEAAAQVIQPQQIFAIGYIHSGKLYIGGTPAELNTATGNAANCPAFKDSVVGDSNSQPLPQLFGRNIDYLGVFQDRLIIGTGSTLMCSRPGDYFNWFRQTVLDVLDNDPIEMYALGSEDDTIKWDTSFDRNHVLFGRKFQYVLPGRVALTPKNPSIQIMSANEDAIRAQPKSSGNFVFFAKDASVKGSVHQIQLGATADTAEAYECSQQLDRYLKGYPIQLLCTTSPYNVFVRTYDHPNGFYCYSYLDAMGGGERLYDSWSRWEWNPMLGACMGIAQYQGDILCMTVRSRPGKGSWMFMDLFRLDTRLSSYPYLDSWRWYKDVAQNSLWADAGAHNEASIAYLQNHGYYMLGSKWATVNANMPWYDEVGHREHLTFGWEFESSLELTNPYLRDRNDKAITNGRLTLLNYSITLHDSGGLTACREDADRKICTTTFDGRLLTRKQNIIGAAPILDTTVRVPVGKEVRECKVTLSAMTWLPFGIASIEWTGHWFNNARRV
Physico‐chemical
properties
protein length:851 AA
molecular weight: 94600,85550 Da
isoelectric point:7,22585
aromaticity:0,11281
hydropathy:-0,27133

Domains

Domains [InterPro]
IPR058003
TTP
1–850
IPR058003
DC_0058
STR
1–851
DC_0058
QDH46279.1
1 851
Architecture
STR
STR 1-851
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH46279.1
1 851
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,7383
Central domain 149 347 200 0,5399
C-terminal 348 851 503 0,4899
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-347
C-terminal
348-851

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh2
[NCBI] 		2591026 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH46279.1 [NCBI]
Genbank nucleotide accession
MK838108 [NCBI]
CDS location
range 4147 -> 6702
strand +
CDS
ATGGCCAAGGTTACAGGCTCTTTCGAGTCGGTGTATCGCGGGGTCTCCCAGCAGGTTCCGCAGGCCCGCCGCTCTGGCCAGATGGCCGAACAGGTCAACATGATTTCCGACCCGGTGCGTGGGGTTGTTCGCCGCCACGGCAGCCAAGCCTTGCACGGATTCCAGATTAGCGGTGCAGACATGAACGCCACTCAGCTGGCGGAGCTGGCCCGCAAGTACACCACCATGCCGTACCACTGCAACGGCAAGGAGTACGAGCTGTTCTACTCCAAGGAGGGGGTCACAGGTTATCCCGGTGCCATCCCTGTGGTGGCATACGATAAGGCCAAGCAGGAAATAATGCCTACCGTGCTCTACGGTGGGCTGGCCAACCTGCTGACCTCGAACGGCGTGTCCAGCATGGTGAACATTGGCAAATTCGTGTTCATCGCCGTGAACGGGTTCTCGCCGACCTACCACTTCGCTACCAACATGGTGGACACAGCGGCTCAGCGTGTGGGTGTGCTGTGGATTCGGAATGGTGGGTTCAGCCGGACGTACACGCTCAAGCTGACCATGGTGGATGGTTCAGTGAAGACGATAACCTACACCACACCGGCCGCCACGTATCAAGGCACGCTTAACACCTCCGACATCCCGTACGACGAGACTAAGCCTTGGCTGTACCAGCAGGCAGTGGCCAACCGGACCAACGCCTACAACACGGCAGTGACACAGCACATCGCCACGGCGACCGCTGCAATCGCACCGGATGCCATCGCTCGCGAAATGTATACCCGCATGATGGCTGCCGGCATTGCAGCGAACAACGTAGCGGCTGACGGTGCCTACGTCCTGTGGAACCAGAACGCCAACGTGGCCTTTGCCTCGCTGGATGATGGTGGTGACGATTCCTATGCCCGTGTGAATGTGCACTCGGTCGATACCGTAGAGAAGCTGGTCCCCAAAGCCTACAACGGCATGTTGATGAAGATTGCTGCCAAGCGGTCGAACAACAAGGACGCCTTCTACATGCGGGCCACCACGAAGGATGGCAGCATGTTCGGGGAGGTGGTGTGGAAGGAGGCGGCAGCACAGGTTATCCAGCCGCAGCAAATCTTCGCCATAGGCTACATCCATTCCGGGAAGCTGTATATCGGCGGAACACCGGCGGAGCTCAACACGGCTACCGGTAACGCGGCCAACTGCCCAGCGTTCAAGGATAGCGTGGTCGGCGATTCGAACTCCCAACCGCTTCCCCAGCTGTTCGGGAGGAACATAGACTACCTCGGCGTGTTCCAAGACAGGCTAATCATTGGCACTGGCTCTACGCTGATGTGCTCCCGCCCCGGCGACTACTTCAACTGGTTCCGACAGACGGTGCTGGACGTGTTGGACAACGACCCCATTGAAATGTATGCACTTGGTTCCGAGGACGATACCATAAAGTGGGATACCTCGTTCGACCGCAATCACGTCCTGTTCGGCCGCAAGTTCCAGTACGTGCTCCCCGGCCGGGTGGCGCTGACCCCGAAGAACCCCTCCATCCAGATTATGTCTGCGAACGAGGATGCGATTCGTGCCCAGCCCAAGTCCTCTGGCAACTTCGTGTTCTTCGCCAAGGACGCCAGCGTCAAGGGCTCGGTTCACCAAATCCAGCTCGGTGCCACGGCGGACACGGCCGAGGCGTACGAGTGCAGCCAACAGCTGGACCGCTACCTCAAGGGTTACCCGATTCAGCTGCTCTGCACCACGTCGCCCTACAATGTGTTTGTGCGAACCTACGACCACCCCAACGGGTTCTACTGCTACTCCTACCTCGACGCCATGGGCGGAGGTGAGCGGCTGTACGACAGCTGGAGCCGGTGGGAGTGGAACCCGATGCTCGGGGCCTGCATGGGCATCGCTCAGTATCAAGGCGACATCTTGTGCATGACGGTGCGTAGCCGTCCCGGAAAGGGCTCATGGATGTTCATGGACCTCTTCCGACTGGACACCCGACTCTCGTCCTACCCGTATCTGGACAGCTGGCGATGGTATAAGGACGTTGCGCAGAATTCCCTGTGGGCCGATGCCGGTGCACACAATGAGGCCAGCATCGCCTACTTGCAGAACCACGGCTACTACATGCTCGGCTCGAAGTGGGCCACGGTTAATGCGAACATGCCGTGGTACGACGAGGTGGGGCACCGGGAGCACCTGACGTTCGGGTGGGAGTTTGAATCCTCGCTGGAGCTGACCAACCCGTACCTGCGGGACCGGAACGACAAGGCCATCACCAACGGCCGACTCACCCTGCTCAACTACAGCATCACCCTGCACGATTCTGGTGGCCTGACGGCCTGCCGGGAGGATGCAGACCGTAAGATTTGCACCACCACCTTTGACGGCCGCCTCCTGACCCGGAAGCAGAACATCATCGGTGCTGCACCAATCCTCGACACCACGGTGCGGGTGCCGGTAGGCAAGGAGGTGCGGGAGTGCAAAGTAACCCTCTCGGCAATGACTTGGCTACCCTTCGGGATTGCGAGCATTGAGTGGACCGGGCATTGGTTCAACAACGCACGGAGAGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
167f9118cf7216d21aeb3cdf69c8624884369db5003a2115d02a79331808fdf3
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2966
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank