Protein

View in Explore
Genbank accession
QVW29072.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,97
Protein sequence
MGAALKIDIHGEKGGSTSPKSPTEASDSLRSTNLAKLLIAVGEGEFEGTPTAADIYLDNTPINDASGNVNFQNVKWEWRTGSVDQSYIPGIPSIDNETTVNVELRNDSPWVRSITNTQLSAVRVRLAWPALQRQDDEGNVGGYRIEYAIDVATDGGSYTQVLLEAVDGKTTTRYERSRRIDLPAATSGWQIRVRRLTANQNTNKIADTMLVAGLTEVIDAKLRYPNTALLYIEFDAEQFTNIPAVTVKCKARKWQVPSNYDPVNHTYTGVWDGSMKLAWTNNPAWITFGVCTEDRFGLGKRIKTWMVDKWELYRIAQYCDQDVPNGVGGVEPRFLCDMNLQGKADAWSLLRDIAGIYRGMTYWAQGQLVAQADMPRAQDFDYVFTRANVIDGKFKYGSASAKTRYTRAIVGYDNPDNNYDTDVIPFADAALQRRLGDKPTELTAIGCTRASEAQRRGKWVVMSNNQDRTVSFSTGMEGAIPLPGYIIPVADSLLAGREVGGRISGAVGRVVTLDRDTMAKAGDRLIINLPSGQAEGRTVQSVAGRAITVTVAYSETPNTQLQWALDADDLAIPLYRVLSVKRNTEGEYAITALQYEPSKFGYIDTGARLEERPISVIPITVVPSPASVSLTSTTAIAQGLAVTTMTISWPAVVGAVSYDVEWRKDSGNWIKVQRTGSTSVDITGIYAGGYLARVRAVSAYDISSGWRNSILTQLKGKEGLPPAVTSLTAASLIFGIKLKWTFPPGAEDTQRTEIWYGPTTDLAKATKLSDLAYPQSEHVMQGLLAGVTFFFWARLVDRTGNIGPWYPTGVGVMGQTSSDAGAILEMIADQISETELAKNLLDRIDLIDGSGPGSVNERLDELKAEIGEITDALVYVPTDAYVRDNTVRVGDNLWTAIAAVPAATNGSNGPPNPTYWVNTGQSIRAANAQADQVSKNTANIETVNGRTTATASQLQAVQAQYRADSGEGDLLDALRGWDSTASAAQEVKIRAEDDFAQAQRTTTLQARVGTNEARITTVETTTATDREATAQRITAIDSRVGASESKITTIESTANTDRQATAQQISTLSTSVGTTQAAIQTEATARSDGDTALGKRVDTVQATANNASAAVQTVSSAQATTDGKLTAMYTVKLQVNSNGQYVMAGIGAGIENVGGVLQSQILMSADRFALVNTLAGGAISTPFVAQNGQLFLGPTFIQDGTITNAKIGSYISSTNYIAGQSGWILSKDGTFEINSPLAGGGRQVINGQGGKVYDERGQLRYQWGNLAA
Physico‐chemical
properties
protein length:1268 AA
molecular weight: 136551,07200 Da
isoelectric point:5,13605
aromaticity:0,07413
hydropathy:-0,26088

Domains

Domains [InterPro]
DC_0129
STR
1–898
DC_0129 DC_0515
IPR053171
Unmapped
7–1241
IPR053171
IPR055385
ATT
95–220
IPR055385 DC_0671 IPR015406
QVW29072.1
1 1268
Architecture
STR
ATT
STR
RBD
STR 1-94 | ATT 95-220 | STR 221-898 | RBD 899-1268
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Medea1
[NCBI] 		2834256 Uroviricota > Caudoviricetes > Medeavirus >
Host Pseudomonas syringae pv. tomato
[NCBI] 		323 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae group genomosp. 3

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVW29072.1 [NCBI]
Genbank nucleotide accession
MW862109.1 [NCBI]
CDS location
range 3003 -> 6809
strand -
CDS
ATGGGCGCAGCACTGAAGATCGATATCCACGGTGAGAAAGGCGGCAGCACCAGTCCGAAGTCGCCGACCGAGGCGTCCGATAGCCTGCGCTCTACCAACTTGGCCAAGCTGCTCATCGCAGTAGGCGAGGGCGAGTTTGAAGGCACTCCAACCGCTGCTGACATCTACCTCGACAACACGCCGATCAATGATGCCAGCGGCAACGTCAATTTCCAAAACGTGAAGTGGGAGTGGCGCACCGGTTCAGTTGATCAATCGTACATCCCTGGGATTCCATCGATCGACAACGAGACGACCGTCAATGTCGAGTTGCGTAACGATTCTCCGTGGGTTCGCTCCATCACCAACACCCAGCTGTCCGCCGTGCGCGTGCGATTGGCATGGCCCGCGCTCCAGCGGCAGGACGACGAAGGTAATGTAGGCGGCTACCGCATTGAATACGCCATTGACGTGGCCACTGACGGCGGCAGCTACACGCAGGTGCTGCTGGAAGCTGTAGATGGCAAGACCACCACCCGCTATGAGAGATCGCGCCGTATAGATCTGCCCGCGGCTACATCCGGCTGGCAGATCCGCGTCCGACGCCTGACCGCCAACCAGAACACCAACAAGATCGCCGACACCATGCTGGTGGCTGGGCTCACGGAGGTCATCGACGCAAAGCTGCGCTACCCGAACACGGCGCTGCTCTACATCGAGTTCGACGCAGAGCAGTTCACCAACATTCCCGCCGTGACGGTTAAGTGCAAGGCGCGGAAATGGCAGGTGCCGAGCAACTATGATCCGGTCAACCACACTTATACCGGCGTGTGGGACGGCAGCATGAAGCTGGCGTGGACCAACAACCCTGCATGGATCACCTTTGGTGTGTGCACCGAAGACCGGTTCGGTCTGGGCAAGCGCATCAAGACATGGATGGTCGACAAGTGGGAGCTGTATCGCATCGCGCAGTACTGCGATCAGGATGTCCCAAACGGGGTTGGCGGTGTAGAGCCTCGCTTTCTCTGCGATATGAACCTGCAGGGCAAGGCTGATGCCTGGTCCCTGCTGCGCGATATCGCAGGAATTTATCGCGGCATGACCTACTGGGCCCAGGGGCAACTGGTGGCGCAGGCTGATATGCCGCGCGCGCAAGACTTCGATTATGTCTTCACTCGCGCCAACGTCATCGACGGCAAGTTCAAATATGGCAGCGCCTCGGCGAAGACTCGCTACACCCGGGCAATCGTCGGTTACGACAACCCAGACAACAATTACGACACCGACGTCATTCCATTTGCAGACGCTGCGCTACAGCGGCGTTTGGGCGACAAGCCGACTGAGCTGACCGCTATCGGCTGCACGCGCGCTTCCGAGGCGCAGCGGCGCGGAAAGTGGGTCGTAATGAGCAACAACCAAGACCGTACCGTTAGTTTCAGCACCGGCATGGAGGGCGCGATTCCGCTGCCTGGTTACATCATCCCGGTTGCCGACTCGCTTCTGGCGGGCCGGGAGGTCGGCGGGCGCATCTCTGGCGCGGTCGGGAGGGTGGTTACGCTCGACCGCGACACTATGGCGAAGGCCGGTGACCGCCTGATCATCAATCTGCCCAGCGGCCAGGCCGAAGGCAGGACCGTTCAGTCAGTTGCGGGCCGAGCAATTACCGTCACTGTCGCTTACAGCGAGACACCGAATACCCAGCTGCAATGGGCGCTGGACGCTGATGATCTGGCTATCCCGCTTTACCGGGTACTGAGCGTCAAGCGCAACACCGAAGGCGAGTACGCGATCACCGCCCTCCAATACGAGCCAAGCAAGTTCGGCTACATCGACACCGGGGCGCGACTGGAAGAGCGCCCTATCAGCGTGATCCCGATCACCGTTGTTCCATCACCTGCCAGCGTTTCACTGACATCCACGACGGCGATAGCCCAAGGGCTGGCCGTTACAACGATGACCATCAGCTGGCCCGCTGTCGTCGGCGCGGTGTCTTATGACGTCGAGTGGCGCAAGGATAGCGGCAACTGGATCAAGGTTCAGCGAACCGGCTCCACCAGCGTAGATATCACGGGTATATATGCCGGCGGCTACCTCGCTCGTGTGCGCGCCGTCAGCGCTTACGACATCTCTTCGGGCTGGCGGAATTCGATACTGACTCAGCTCAAAGGCAAGGAGGGGCTGCCACCGGCTGTCACCTCGCTGACTGCCGCTTCGCTGATCTTCGGCATCAAGCTGAAATGGACCTTCCCACCAGGTGCAGAAGACACGCAGCGCACTGAAATCTGGTACGGGCCGACGACCGATCTGGCCAAGGCCACGAAACTCAGCGACCTGGCCTATCCGCAGTCGGAACACGTCATGCAGGGCCTGCTGGCGGGTGTGACGTTCTTCTTCTGGGCGCGGCTTGTGGACCGGACCGGCAACATCGGGCCGTGGTATCCGACCGGCGTGGGCGTAATGGGGCAGACCAGCAGTGATGCTGGGGCGATTCTTGAAATGATCGCCGACCAGATTTCGGAAACGGAGCTGGCCAAGAACTTACTGGACCGTATCGACCTCATTGACGGAAGCGGGCCTGGCTCTGTCAATGAGCGCCTGGACGAGCTGAAGGCCGAGATCGGAGAAATCACCGACGCTCTGGTCTACGTGCCGACCGATGCCTACGTGCGCGATAACACCGTGCGCGTGGGTGACAACCTCTGGACGGCCATTGCAGCGGTGCCAGCGGCTACCAATGGATCGAACGGCCCGCCGAACCCGACGTACTGGGTGAACACAGGCCAGTCCATTCGCGCCGCTAACGCCCAGGCTGATCAGGTTTCAAAAAACACAGCCAACATCGAGACTGTGAACGGCAGGACCACGGCGACCGCCAGTCAACTCCAGGCAGTGCAGGCGCAGTACAGGGCCGACAGCGGGGAAGGCGATCTGCTCGATGCGCTTAGAGGGTGGGACAGCACGGCCAGCGCGGCACAGGAAGTGAAGATCAGGGCGGAAGATGATTTCGCCCAGGCTCAGCGCACCACGACTCTGCAGGCGCGTGTTGGCACCAATGAGGCGCGAATCACCACCGTCGAAACGACTACTGCCACGGACCGCGAAGCGACTGCCCAGCGGATTACGGCAATCGATTCTCGTGTTGGTGCGAGCGAATCGAAGATCACGACGATTGAGTCAACCGCAAACACGGACAGGCAGGCCACCGCACAGCAGATTTCAACGCTGAGTACTTCTGTCGGAACAACTCAGGCTGCCATTCAGACCGAGGCTACTGCCCGCTCTGATGGCGATACAGCGCTGGGCAAGCGCGTGGACACTGTCCAAGCAACAGCCAACAACGCGAGCGCAGCGGTCCAGACAGTTAGCTCGGCCCAGGCGACCACGGACGGCAAGCTGACGGCGATGTATACCGTCAAATTGCAAGTCAACTCCAACGGCCAGTACGTCATGGCCGGGATAGGCGCAGGGATTGAGAATGTTGGCGGGGTTCTGCAAAGCCAGATCCTCATGTCGGCTGATCGGTTTGCGCTGGTGAACACTTTAGCGGGTGGCGCGATTTCGACGCCTTTCGTTGCACAGAACGGCCAGTTGTTTCTTGGTCCCACATTCATTCAGGACGGGACTATCACCAACGCGAAGATTGGCAGCTACATCAGCTCGACGAACTATATTGCAGGCCAATCAGGGTGGATTCTGAGCAAAGACGGTACGTTCGAAATCAACTCACCGCTTGCCGGGGGAGGCAGACAGGTCATTAACGGTCAAGGCGGCAAGGTTTATGACGAGCGAGGCCAGTTGCGCTACCAGTGGGGGAATTTAGCCGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
951469bb783571c13ff8cba5b03f0b34ea97b097ad0b8eb3455fff61c52f312f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7653
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel bacteriophage against Pseudomonas syringae pv. tomato and it's prophylactic efficacy Skliros,D., Papazoglou,P., Paraskevopoulou,E.G., Gkizi,D., Goumas,D.E., Tjamos,S. and Flemetakis,E. 2023-04-19 — GenBank