Protein

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Genbank accession
YP_007236097.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNEMFSQGGKGSTGILTNKQAIARKFGVKQSEVVYFSVGVDLGGYKVIYDKETQRAYSLPAGIVSGTTAVSLSAAAVLVHSAGSVDLGELAVSREEYVTLPGTFDTGATLNAKNELLVYLDSKYRWEGAFPKTIPANSTPASTGGVSSSAWSLVTDGYLRSDLIAADGFKNIGRCASVVALRATEPTINKQMISLVEYTEGTGFGGGLLWYDNTDTTSSDNGVNIFVTAGGKRWKRLNSSVPTLIDAGGVPSISVDSSAALTRLFAVGNAGHIPEGSFSVKGVILSRSNYKLTCAGTLYLGVRASTSENNGGVSAFVGIILQDCNGVSIQTRWHGQRTLQPAEEHIYCLAVDGGSQIDIDLDAQEVAGDGLYVTQSNPLASSTIPSHVSINARVHNSELSGRNAVSIISLDNFTLKLDCKNVGGLINGFQQPGGLDLEPNFDYQTITNGQIELIADNCAFGLCFFGKNYNIRNVTVVAQLSNNCRPYLSRFQECDVTINNKDSAVAGDVNTCLDSKLRFRHYNCAIGVSYGYRGDCIRCDIETSGSEWVNSVASHFGVQDSSFSVKAYNCAGGGAGFAWVIGIPEGQTSSYVPSNNKYSIDCPKKGNAVYAIRNVSGLSLSRCILCNSNLGGWNNWGEAVLGQVANVIESTICNGLSSSNATPGIGYYPQGHIVRANSNTITTGRALYGWLRLTTGNSHIPDTDWKTVHFIW
Physico‐chemical
properties
protein length:712 AA
molecular weight: 75787,94470 Da
isoelectric point:6,03666
aromaticity:0,08708
hydropathy:-0,07570

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 cd20481
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
IPR040775
RBD
91–156
IPR040775
YP_007236097.1
1 712
Architecture
ATT
STR
ATT 1-165 | STR 168-702 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007236097.1
1 712
Domain Start End Length (AA) Confidence
N-terminal 1 256 256 0,9928
Central domain 257 649 394 0,9683
C-terminal 650 712 62 0,9653
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-256
Central
257-649
C-terminal
650-712

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SKML-39
[NCBI] 		1204528 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007236097.1 [NCBI]
Genbank nucleotide accession
NC_019910 [NCBI]
CDS location
range 2728 -> 4866
strand +
CDS
ATGAACGAGATGTTCTCCCAAGGTGGTAAAGGCTCCACTGGTATTCTTACCAATAAGCAAGCCATTGCCCGTAAGTTTGGTGTTAAACAATCTGAGGTTGTTTACTTTTCTGTTGGAGTAGATTTAGGAGGATATAAAGTTATCTACGACAAGGAGACGCAAAGAGCCTATTCCCTACCTGCTGGCATTGTTTCCGGTACTACTGCTGTTAGTCTTAGTGCTGCTGCTGTACTTGTACATTCAGCTGGTTCTGTAGATCTTGGGGAATTAGCCGTATCCCGGGAAGAATACGTTACATTGCCTGGGACGTTTGATACAGGTGCTACCCTTAATGCTAAGAATGAGCTACTCGTATATCTGGATTCTAAATATCGTTGGGAGGGTGCATTTCCTAAAACAATTCCAGCTAACTCAACACCGGCATCCACGGGCGGAGTGTCAAGTTCGGCCTGGTCGCTGGTTACTGATGGGTATCTACGGTCTGATTTAATAGCAGCCGATGGCTTTAAAAATATCGGTAGATGCGCGTCGGTAGTAGCCCTGCGGGCAACAGAACCAACAATCAACAAGCAGATGATTAGTCTGGTAGAGTACACCGAAGGAACAGGGTTCGGTGGGGGGCTTTTGTGGTATGACAACACAGACACGACAAGTTCAGATAACGGGGTTAATATTTTCGTTACTGCTGGTGGGAAGCGCTGGAAGCGGCTCAACTCATCGGTTCCTACGCTGATAGACGCGGGCGGAGTTCCGAGTATTTCCGTTGACTCATCGGCAGCATTAACGCGGTTATTCGCTGTCGGTAATGCGGGTCACATACCGGAAGGTAGCTTCAGCGTTAAAGGAGTTATCCTGTCCCGTAGCAACTATAAGCTTACTTGCGCGGGTACGCTTTACCTAGGTGTACGCGCATCTACCTCTGAGAACAATGGCGGAGTTTCTGCGTTCGTCGGTATAATACTTCAGGACTGTAACGGGGTATCCATCCAGACCCGTTGGCACGGACAGCGTACTCTGCAACCAGCGGAGGAGCACATCTACTGCCTGGCAGTAGATGGCGGGTCTCAGATTGATATAGACCTGGATGCCCAAGAAGTAGCCGGGGATGGTCTGTATGTGACCCAATCTAACCCGTTGGCTAGCTCTACTATACCATCGCACGTCTCAATCAACGCGAGGGTACACAACAGTGAGCTATCCGGGCGCAACGCAGTAAGCATTATCAGTCTGGATAACTTCACGCTTAAACTCGACTGCAAAAACGTCGGTGGTCTTATAAACGGATTCCAGCAGCCAGGTGGACTGGATTTAGAGCCAAACTTTGACTACCAAACCATTACAAATGGGCAGATTGAGTTGATTGCAGATAACTGCGCTTTCGGCCTCTGCTTCTTTGGTAAGAACTACAATATCCGCAACGTTACAGTGGTCGCACAGCTTAGCAATAACTGCCGACCGTACCTGTCACGGTTTCAAGAATGTGATGTTACCATCAACAATAAAGATAGCGCAGTAGCTGGTGATGTTAATACATGCCTGGATAGTAAGTTGAGATTCAGACATTATAACTGTGCTATTGGTGTTAGTTATGGGTATCGTGGGGACTGTATCCGTTGCGATATAGAAACCTCCGGGTCGGAATGGGTAAACTCAGTAGCCAGCCACTTTGGTGTTCAGGACTCTAGTTTCTCAGTTAAAGCGTATAACTGTGCAGGTGGAGGCGCTGGTTTCGCTTGGGTAATAGGAATTCCAGAGGGTCAGACTAGTTCCTATGTACCTAGCAATAACAAGTACAGTATTGACTGCCCTAAAAAAGGGAACGCAGTCTACGCAATCCGTAATGTGAGCGGGCTTTCACTTAGCCGCTGTATCCTCTGCAATAGTAACCTTGGTGGTTGGAACAACTGGGGTGAGGCTGTGCTGGGACAGGTAGCTAACGTCATTGAGAGCACTATTTGTAATGGTCTAAGTAGTTCTAATGCTACACCTGGAATTGGGTACTATCCGCAAGGCCATATTGTACGGGCTAACAGTAACACGATTACTACCGGGCGTGCCCTTTACGGATGGTTGCGACTGACTACGGGTAACTCGCACATACCTGATACCGACTGGAAAACTGTCCATTTCATCTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
38010d1fa5610deedde60fe024e03593fcd39cad873c889eeae51450c4b0a6a3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8059
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank