Protein

View in Explore

Genbank accession

WYA84519.1 [GenBank]

Protein name

colanic acid degradation protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,95

Protein sequence

MTLFPTYPATSLEQGVDLVIFSSNQIHDIINGSATESIDTESGLIPTLRKALVDNFYFKSPIAWAQGTNETVFNQLRFYQNGILSGYYYAPAATLVNPIPMQGTPVGDNNWVLWGMQTEQLPSEVIPWLYTSATGYEKVISPPYVFDSAIVTINGVIQIVGDAFRIENSQIILSEPLGHDPATGLPNQLFAYIGKIVASAENDPNLENRISNLETTTETLTEDMNAVPLQTIARKYGFLNYEVAYAKSGQALIGLKALYDATNQIAYTLPPGLTGTFVSLSDTGVLTHSSGTVDLAALAVERQQYVHLPTSFGNEITLTLKHQTIGMGAGRYRWAGTLPKTLSASDTLASSGGVGPNAWVLTNTEGLLTPHGGKFDDLFDVVYLSEFANSPVYATQEAAFQAALVATAATKSKILNAYGCDMTFTTSSFDITGITLLGGVFRGQRDYRLQNCKVEGTTFRNSRVMYWGGDVRIYDCLWDGAPRPGQVGSLVFQGNPIPGTFEIDNCTFKNGLYGILQQGTGEPVSRGVFRNLTFMDMQGDAIELNVINKHYDEGCVIENIYLSHIDGTNAPIPLSNWGIGIGVAGKGPYGYDIPDTQYCKNITIRNVFAKRCRQIVHVEVGRNISIQNIHGDPDQTVSVGTGLATGAVVMYGCKDFTIDGVYGEPITDDNTLPSAIRMIYLEWGTNAVLGEDGKPVVPAQGRPSNPCFNYSVRNVHTATGRVFAGVSAGPGFENRVSFDNIRCNALQLFGIASWLSMANITCNSFECVGQPESGPGTFYDGFFRREKSVLEMVNVNCYPNGNTMVTGRPQWSRCRYSDIHRINCNVEANMYTNIAGGIGALVGSTGKSYYIEAIPGRNIDGMHFPTGKEFDKGDIIVKADNTFFLVTTSGAYIPDIPAFGIRATNVGDKSIVQNLTPNGTATNASWLYHYPLSAGTRIRIAGAGPGGSDLDTVITRAPYQDNDTWTNPVKVDIADPIQTATAAGVRITTIPNSASNVAVGNTAVIRPTPVIDTPTT

Physico‐chemical properties

protein length:	1016 AA
molecular weight:	109788,38090 Da
isoelectric point:	5,08723
aromaticity:	0,09646
hydropathy:	-0,09154

Domains

Domains [InterPro]

IPR058969
ATT
10–113

IPR058969 G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_0354 IPR011050 DC_0045

G3DSA:3.30.2020.50
ATT
223–315

G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR023882

IPR040775
RBD
299–361

IPR040775

WYA84519.1

1 1016

Architecture

ATT

STR

RBD

ATT 10-113 | ATT 223-363 | ATT 365-424 | STR 425-630 | RBD 631-665 | RBD 681-990 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058969	ATT	DC_0606	10	113	InterPro cluster	Putative phage tail fibre, N-terminal domain	N-terminal	High	Text match	229 proteins / 229 hits
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	223	304	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	223	315	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR040775	RBD	DC_0821	299	361	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	305	363	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	315	363	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
DC_0354	ATT	DC_0354	365	424	Novel HMM	DC_0354	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR023882	RBD	DC_0588	414	665	InterPro cluster	Colanic acid biosynthesis WcaM	C-terminal	Low	Positional only	146 proteins / 146 hits
IPR011050	STR	IPR011050	425	630	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
DC_0045	RBD	DC_0045	681	990	Novel HMM	DC_0045	C-terminal	Low	Positional only	142 proteins / 142 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

WYA84519.1

1 1016

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	391	391	0,9896
Central domain	392	858	468	0,9923
C-terminal	859	1016	157	0,6181

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-391

Central
392-858

C-terminal
859-1016

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pseudomonas phage PsgM04F [NCBI]	3088886	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Pseudomonas syringae pv. garcae [NCBI]	251653	Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas coronafaciens

Coding sequence (CDS)

Genbank protein accession

WYA84519.1 [NCBI]

Genbank nucleotide accession

OR584014 [NCBI]

CDS location

range 148088 -> 151138
strand +

CDS

ATGACACTATTCCCAACATATCCCGCTACGTCCCTGGAACAGGGCGTAGATCTGGTAATCTTTTCTTCTAACCAGATACACGATATCATCAACGGAAGCGCAACAGAAAGTATTGATACGGAATCAGGATTGATTCCGACTTTACGTAAGGCTTTGGTTGATAACTTTTACTTCAAAAGTCCTATTGCCTGGGCGCAAGGGACTAATGAAACAGTATTCAACCAACTCCGTTTCTATCAGAACGGAATCTTGAGTGGATACTACTACGCTCCAGCAGCAACACTGGTGAACCCTATCCCAATGCAAGGGACTCCAGTCGGGGACAATAACTGGGTGCTGTGGGGAATGCAGACTGAACAACTCCCAAGTGAAGTTATTCCTTGGTTGTATACCTCTGCAACAGGTTATGAAAAAGTAATCAGTCCTCCTTACGTGTTCGATAGTGCTATTGTGACTATCAACGGCGTTATCCAGATTGTGGGTGATGCATTCCGTATTGAGAACAGTCAGATCATCTTGTCCGAACCACTTGGACATGATCCTGCAACCGGATTACCTAATCAGTTGTTTGCTTACATCGGTAAGATTGTAGCAAGCGCAGAAAACGATCCTAACCTCGAAAACCGAATTTCGAACCTGGAAACAACTACTGAAACATTGACCGAAGATATGAACGCTGTTCCTCTTCAGACAATCGCTCGTAAATATGGTTTCCTGAATTACGAAGTGGCTTACGCAAAATCAGGACAAGCTCTAATAGGTCTGAAAGCCCTGTATGATGCCACTAACCAAATAGCTTACACCCTGCCACCTGGTTTAACTGGGACATTTGTTAGCTTATCAGATACTGGTGTTCTTACCCACTCTTCTGGTACTGTTGACTTGGCAGCATTAGCAGTTGAACGTCAGCAATATGTACATCTGCCTACCAGTTTCGGTAATGAAATTACCCTGACCCTTAAACACCAGACTATTGGTATGGGTGCAGGTCGTTACCGTTGGGCTGGCACTTTGCCAAAAACTCTCTCTGCGAGTGACACCCTTGCCTCCTCTGGTGGCGTAGGTCCAAATGCTTGGGTACTGACAAACACAGAAGGTCTGTTAACTCCACACGGTGGTAAGTTTGACGATCTGTTTGATGTTGTTTACCTGTCCGAGTTTGCAAACAGTCCAGTGTACGCTACTCAAGAAGCAGCTTTCCAAGCGGCTCTCGTGGCAACAGCAGCAACCAAGAGCAAGATCCTGAATGCTTATGGTTGTGATATGACCTTCACTACAAGTTCTTTTGATATTACTGGGATCACCCTCCTTGGTGGTGTCTTCCGTGGACAACGTGACTACCGTCTACAAAACTGTAAAGTGGAAGGTACGACTTTCCGCAACTCCCGTGTAATGTATTGGGGTGGCGATGTGCGTATCTATGACTGCTTGTGGGATGGTGCACCTCGTCCAGGACAGGTTGGTAGCTTGGTATTCCAGGGCAACCCAATTCCAGGTACTTTTGAGATTGACAACTGTACGTTTAAAAACGGACTTTACGGTATCCTTCAACAAGGTACTGGGGAACCAGTTAGTCGCGGTGTATTCCGTAACTTGACGTTTATGGATATGCAGGGCGACGCAATCGAACTGAACGTAATCAACAAACATTACGATGAAGGTTGTGTTATTGAGAACATCTACTTGTCTCACATCGACGGAACGAACGCACCAATTCCTCTTTCTAACTGGGGTATCGGTATCGGTGTAGCAGGTAAAGGTCCATACGGTTATGACATTCCAGATACGCAGTATTGTAAGAACATTACAATCCGTAACGTATTTGCGAAACGTTGCCGCCAGATTGTTCACGTAGAAGTTGGTCGTAACATTTCTATCCAGAACATTCACGGTGATCCTGACCAGACAGTTTCTGTTGGTACAGGGCTTGCAACAGGCGCTGTTGTAATGTACGGCTGTAAAGATTTCACGATCGATGGTGTTTATGGTGAGCCTATTACAGACGACAATACGTTGCCAAGTGCAATCCGTATGATCTATCTGGAATGGGGGACGAACGCAGTTTTAGGCGAGGATGGTAAACCTGTTGTTCCTGCACAGGGTCGCCCATCAAACCCTTGCTTCAACTACTCTGTACGTAACGTTCATACTGCTACAGGGCGTGTGTTCGCTGGCGTATCAGCGGGTCCAGGTTTTGAGAACCGTGTTAGCTTCGATAACATCCGTTGTAACGCTTTGCAATTGTTTGGTATCGCTTCTTGGTTGTCAATGGCTAACATTACTTGTAACTCTTTCGAGTGTGTAGGTCAACCGGAATCTGGTCCAGGTACTTTCTACGATGGATTCTTCCGTAGAGAGAAGTCAGTTCTGGAAATGGTGAACGTAAACTGCTATCCGAATGGAAACACAATGGTAACTGGACGTCCTCAATGGAGTCGTTGCCGTTACTCGGATATTCATCGTATCAACTGTAACGTTGAAGCGAACATGTATACGAACATCGCAGGTGGTATTGGTGCTCTGGTAGGCTCTACTGGTAAATCTTACTACATCGAAGCAATCCCAGGTCGCAACATTGACGGGATGCACTTCCCAACAGGGAAAGAGTTCGATAAAGGAGATATTATCGTTAAAGCAGATAACACGTTCTTCCTTGTAACAACAAGTGGTGCGTACATCCCAGACATTCCAGCCTTCGGTATCCGAGCGACAAATGTTGGTGATAAATCGATTGTGCAGAACCTGACACCTAACGGTACAGCAACAAATGCTTCTTGGTTATATCATTACCCACTGTCAGCAGGTACACGTATCCGTATCGCAGGTGCAGGTCCAGGTGGATCTGATTTGGACACAGTAATCACTCGTGCCCCTTATCAGGATAACGATACTTGGACCAACCCAGTGAAGGTGGATATTGCAGATCCTATCCAAACAGCGACAGCAGCAGGAGTACGTATCACAACTATTCCTAATAGCGCAAGCAACGTTGCGGTTGGTAACACTGCGGTAATTCGTCCTACTCCGGTGATTGATACTCCGACGACATAA

Genome Context

Tertiary structure

PDB ID

3d9700a2a839c13f1188a301670e339b760e8a32c8b3b86a683328a4b126b6c5

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2739

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence