Protein

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Genbank accession
XMR00701.1 [GenBank]
Protein name
tail protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSVYQGNYKSVLGGVSEQIYTDRQLTQVEKQVNMTSDTVRGLRKRPGTRLLQLADADSAAQWSLGNFGHIRFYTTNLGWGVTTFLVNTLTGYVTSVVEADTVQYMGQSNYLIADNPEDIVFTTVGSTMYVANCSRMPVLLENDTRMNPARRGYYFVLAGAYGKQYTCKVETSGGAYSATYTTPDSSETGAAAQSTPEHIISQLASQLSAQIGGDTGLEVVQTDGAYMYLQTSAAYPSLNVSTNTGSTYAVASNSHTVDLTTKLPARLPVQADGFVMTVGDASFAQYFQWSYSDSRWVERGAYGSPTGIDPSTMPLLFRTTAAHNQHTFAQGSWPGRLAGDDVTNSVPAFTDADGVGITGLSSFQGRLIIFSGPYITMGSSNKDDRTNFFRTTVTQVLDDDRIEFTASSFAGASFRYGVPFNSDLILASEEHQAIVPGRNQIITPNNATAVLTSTYQMDTRVPPSTSGRSLYYSYPRSNSSFSIKEMVPSGYTDLQYVSQDVTDHLPTYLEGANSYISASTTNNIVVFGSTTERSTLYINEYLWSGDEKVMSSWHKWELYGTIHAAWFVREVLVVLIEQSGHMHVLTLSMRDSPNPVDPARFLPAIDYGQYMPVIAPTTDSAYIQFQSTGAESGLWDVIVGKHTVEGNLDFVACVVGTGQWIGAEVGVKSIDTANRRLYLQPTYGNSNLFVGIRFKSQFSPTPPRMFNQDGSYMEVDKLMVQFYTLTLRYTSPFTVTAEDRGGSVYTGEEFSSISYTSEELGLTSAMLAARAHLKIRVGMEVESSSITFESTTAGDFNLQSLGYLVKFYNRVRRI
Physico‐chemical
properties
protein length:814 AA
molecular weight: 89404,64280 Da
isoelectric point:5,14583
aromaticity:0,11302
hydropathy:-0,20811

Domains

Domains [InterPro]
IPR058003
TTP
1–814
IPR058003
DC_0058
STR
1–814
DC_0058
XMR00701.1
1 814
Architecture
STR
STR 1-814
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR00701.1
1 814
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9869
Central domain 145 356 213 0,1864
C-terminal 357 814 457 0,2444
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-356
C-terminal
357-814

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HHU8
[NCBI] 		3384915 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli H8
[NCBI] 		2072452 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR00701.1 [NCBI]
Genbank nucleotide accession
PQ641135 [NCBI]
CDS location
range 8879 -> 11323
strand -
CDS
ATGTCCGTATACCAAGGCAACTACAAATCCGTTCTCGGTGGGGTAAGCGAGCAGATATATACTGACCGCCAACTAACCCAAGTAGAGAAGCAGGTCAATATGACCTCAGACACTGTGCGTGGCCTGAGAAAGCGACCCGGCACACGATTACTGCAACTGGCTGATGCCGACAGTGCTGCTCAGTGGAGCCTTGGTAACTTCGGCCACATACGCTTTTATACAACTAACCTAGGGTGGGGTGTAACCACATTCCTAGTCAACACACTAACTGGCTACGTCACGTCGGTGGTAGAGGCCGACACCGTGCAGTACATGGGCCAATCTAACTACTTGATTGCAGACAATCCAGAAGATATCGTGTTCACCACAGTCGGTAGTACGATGTATGTGGCCAACTGCTCAAGGATGCCAGTGCTTCTGGAAAACGATACTCGTATGAACCCAGCCCGTAGGGGCTACTACTTTGTGTTGGCTGGTGCATATGGGAAACAATACACGTGCAAAGTTGAGACAAGCGGCGGCGCATACTCCGCAACATACACAACGCCAGATAGCTCTGAAACTGGTGCTGCGGCCCAGTCCACTCCTGAACACATTATCAGTCAGCTTGCCTCGCAACTCAGTGCGCAGATTGGCGGCGATACTGGTCTTGAGGTAGTGCAGACTGATGGTGCGTACATGTACCTGCAAACGTCTGCTGCATATCCTAGTTTGAACGTGTCCACCAATACTGGTAGCACATACGCTGTCGCGTCGAACAGCCACACTGTTGACTTGACTACAAAGCTCCCAGCCAGACTGCCTGTGCAGGCTGACGGCTTCGTGATGACTGTAGGTGACGCGAGCTTTGCTCAATACTTCCAGTGGAGCTACAGTGATTCCCGCTGGGTTGAGCGGGGGGCTTATGGTTCCCCTACTGGTATAGACCCAAGTACAATGCCGCTGCTGTTCCGCACCACTGCCGCACATAACCAACATACATTCGCGCAAGGTAGTTGGCCGGGACGGTTGGCCGGGGACGATGTTACGAACTCAGTGCCTGCATTCACCGATGCAGACGGTGTTGGTATAACAGGGCTGTCATCTTTCCAAGGTAGGCTCATCATATTTAGTGGCCCATACATAACAATGGGGTCTAGCAACAAGGACGATAGGACTAATTTCTTTAGGACTACGGTTACTCAGGTTCTGGACGATGATAGGATAGAGTTTACTGCCTCAAGTTTCGCTGGTGCTTCCTTCCGCTATGGCGTACCGTTCAACTCTGACCTGATACTGGCCAGTGAAGAACACCAAGCCATAGTGCCCGGACGCAACCAGATTATCACGCCTAACAATGCGACGGCGGTGCTTACTTCCACGTACCAGATGGACACCAGAGTGCCGCCTAGTACATCTGGCCGCAGCCTGTATTACTCGTACCCGCGCTCCAATAGCTCATTCTCCATAAAGGAAATGGTTCCGTCAGGCTACACTGATTTGCAGTATGTGAGTCAGGACGTAACAGACCACCTACCCACCTATCTGGAAGGGGCTAACAGCTACATATCCGCAAGTACCACAAATAACATTGTAGTGTTCGGCTCAACGACAGAGCGCTCGACTCTGTACATCAATGAGTACCTGTGGTCTGGCGACGAAAAGGTAATGTCTTCTTGGCATAAGTGGGAACTGTACGGGACTATACATGCAGCATGGTTTGTGCGCGAGGTTCTGGTAGTGCTGATAGAGCAGAGCGGACATATGCACGTGCTCACCCTGTCCATGCGCGACAGCCCCAATCCAGTTGACCCCGCGCGGTTCCTGCCAGCTATAGACTACGGGCAGTACATGCCTGTTATCGCTCCTACTACTGATTCAGCCTACATACAGTTTCAGTCAACTGGTGCAGAATCTGGTCTGTGGGATGTCATAGTTGGTAAACACACTGTTGAAGGTAACCTCGACTTCGTAGCTTGCGTGGTTGGTACTGGTCAGTGGATAGGTGCCGAGGTAGGTGTCAAGTCCATAGACACCGCCAACCGCAGGCTTTACCTGCAACCGACTTATGGCAACTCAAACCTGTTCGTAGGTATCCGCTTCAAGTCCCAGTTCAGCCCCACGCCGCCGCGTATGTTCAACCAAGACGGTTCCTATATGGAAGTGGATAAACTGATGGTGCAGTTCTACACCTTAACCCTGCGATACACTAGTCCATTCACTGTGACCGCAGAAGACAGAGGCGGAAGCGTGTACACCGGAGAGGAATTTAGCTCCATAAGTTATACCAGTGAGGAGCTTGGGCTGACCTCTGCCATGCTTGCTGCACGTGCGCACTTGAAAATACGGGTCGGTATGGAAGTGGAATCAAGCAGCATAACGTTCGAGTCCACCACCGCTGGCGACTTTAACCTCCAATCATTGGGGTACTTGGTTAAGTTTTACAACAGAGTACGGAGAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ad94930fc982bd584f9a42acf2157c8239db923ff379f030eecf9896b512024b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2772
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of Escherichia coli phage HHU8 Han,P. 2013-06-12 — GenBank