Protein

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Genbank accession
XVB93810.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTTPTQLPIPSNNLLDSRFNFEKLDQIVNSDANYYVDRFGKQRLTAKGLEDLINRIEGEFENNVGSPDGYRFVGKATSFDQLRNIPPLVNGQRILLTGYRDGWGFGGGEFEGFFGTGTDDGGITAAGNGFYWRRIDRNSLNLYQFGAYGDNVNDDTPAYKRMVAHIRSLPSSRAAIIDGEGRTFLFTEGIEIDVGYFILTNMTLNFTTITPDKVPTGGNFYAVTITTTRRGYVDTDYRTLRLRDLQIVGPAFNGAINGALTKIHALYFKTDTTLNGFIAENILVRYFHTAIVWSSHSYLQTFSKCRLLHCYAAVSDTKVLEGVDCVDCGENLVFNGCVFDMNVYNLYFVGTNAQWEVRFNYCSFDYFGGYGDLGTIYPFDMSTTQLLWFNDCHFEWGNASSKVSNMFRCGGMSVVEINGGVIRPMSGGNYGTVDLFFYNTGTSSFSINETIFNRAGVTSWANFGLYKFRPRLKDANYIVSGVANTLVPNSIYNIQDANAVHPYSQLEFEVRGLDNEPNTDPHTHPRVTATLSTVTVGGKTYPSILLSKQAGYGVGSYCDFKLYVDRTAQGTVLNGCRCSIIAATVGNPRTLSGSTGAALLNVKGADGMYPTYPKTTPAFSSSIALTTSTTTEFKFNPTPVLVFHANGHQMNKILLRFDLTGLGASESIHIFNIADYGPL
Physico‐chemical
properties
protein length:679 AA
molecular weight: 75009,38750 Da
isoelectric point:5,97835
aromaticity:0,12960
hydropathy:-0,15538

Domains

Domains [InterPro]
DC_1559
ATT
1–134
DC_1559 IPR012334
DC_0715
STR
118–667
DC_0715
XVB93810.1
1 679
Architecture
ATT
STR
ATT 1-134 | STR 135-667 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB93810.1
1 679
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9919
Central domain 156 486 332 0,9872
C-terminal 487 679 192 0,9767
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-486
C-terminal
487-679

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage VB_ZK_P1
[NCBI] 		3425683 Viruses > unclassified bacterial viruses >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB93810.1 [NCBI]
Genbank nucleotide accession
PV662128 [NCBI]
CDS location
range 135982 -> 138021
strand +
CDS
ATGACCACACCTACCCAATTACCGATTCCCAGCAATAACTTGCTGGATTCGAGATTTAACTTTGAAAAATTAGATCAGATAGTTAATTCTGATGCTAATTATTACGTAGACCGATTCGGGAAGCAAAGATTGACCGCCAAAGGTTTAGAGGATCTGATTAATCGTATCGAAGGGGAGTTCGAAAATAATGTCGGATCTCCAGACGGTTATCGATTTGTTGGTAAAGCAACCTCTTTCGATCAACTGAGAAATATCCCTCCTTTAGTCAATGGTCAACGTATTTTGTTAACAGGATATCGTGACGGTTGGGGGTTCGGTGGTGGGGAGTTCGAGGGATTCTTCGGTACCGGTACGGATGATGGAGGGATTACTGCCGCGGGTAACGGTTTCTATTGGCGTAGGATAGATAGGAATAGCCTGAATCTTTATCAGTTTGGTGCTTATGGGGATAACGTTAACGACGATACTCCAGCGTATAAGAGAATGGTTGCTCATATCCGTTCCCTCCCCTCTTCTCGCGCCGCCATTATCGATGGAGAAGGAAGAACTTTCTTATTTACAGAAGGTATCGAAATAGATGTAGGATATTTCATCCTCACAAACATGACTCTAAACTTTACCACAATTACTCCCGATAAAGTTCCAACTGGCGGTAATTTCTACGCGGTAACAATCACTACGACTCGTCGCGGTTACGTCGATACTGATTATCGCACCTTAAGGCTTAGAGATCTCCAAATAGTAGGGCCTGCTTTCAACGGCGCGATTAACGGAGCGCTTACTAAGATCCACGCATTGTATTTCAAAACTGATACGACGCTCAATGGATTTATTGCTGAGAACATTCTGGTGAGATATTTCCACACAGCGATTGTGTGGAGTAGCCACTCTTATCTACAGACGTTTTCTAAATGTCGTTTACTGCATTGTTATGCCGCTGTATCTGATACGAAAGTGTTGGAAGGAGTAGACTGCGTTGACTGTGGTGAAAACCTGGTGTTTAACGGTTGTGTGTTCGACATGAACGTCTATAACCTGTATTTCGTAGGAACGAATGCGCAGTGGGAAGTCAGGTTTAACTATTGCTCCTTCGACTACTTTGGCGGATACGGTGATCTGGGAACCATCTATCCATTTGATATGTCTACGACACAATTACTTTGGTTCAATGATTGCCATTTCGAATGGGGTAATGCAAGTTCTAAAGTCAGTAACATGTTCCGTTGCGGAGGTATGTCTGTTGTAGAAATAAACGGTGGGGTTATTCGTCCTATGTCAGGGGGGAATTACGGAACTGTTGATTTGTTCTTCTACAATACCGGTACTTCGTCCTTTAGTATAAACGAAACCATTTTCAACCGAGCAGGTGTTACATCTTGGGCTAACTTTGGTTTATATAAATTCAGGCCTCGCCTGAAAGACGCGAACTATATTGTTTCGGGTGTTGCGAATACGTTAGTTCCTAATTCTATTTACAATATCCAGGACGCTAACGCGGTCCATCCTTATAGTCAGTTAGAATTCGAAGTGCGTGGTTTGGATAACGAGCCTAATACCGATCCCCACACTCATCCCAGGGTGACTGCTACTCTTTCTACTGTAACGGTGGGCGGTAAAACATATCCGTCTATTCTCTTGAGTAAGCAGGCGGGTTATGGGGTAGGTTCTTATTGTGATTTTAAACTCTACGTGGATCGTACCGCTCAAGGTACGGTATTAAACGGATGCCGGTGCAGTATTATTGCGGCTACCGTAGGAAACCCCCGTACACTTTCTGGTTCTACTGGTGCCGCTCTATTGAATGTGAAAGGGGCGGATGGGATGTATCCAACTTACCCTAAAACAACTCCTGCATTCAGTTCATCCATAGCTCTGACAACGTCAACCACTACTGAGTTTAAGTTTAACCCAACACCCGTTCTGGTTTTCCACGCTAACGGACACCAGATGAACAAGATCCTGCTGCGCTTCGACCTTACAGGATTAGGAGCAAGTGAAAGTATCCATATTTTCAACATCGCCGATTATGGTCCTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e63ccd37167dcc2da0b2066a82a4d979dcd9d11d9e9c742f6e0784e31244941e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7439
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of R. ornithinolytica phage and its targeted bacteriostatic effect on chilled pigeon meat Feng,S., Zhong,L., Zhou,J., Huang,Y., Sun,Y., Yuan,D. and Liang,W. 2025 — GenBank