Protein

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Genbank accession
BEH82812.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MYLVLLERKHDLRPLVRKDKKESGMLGNFSVFESTHDQGISDKAIIKHYEKEKALFSCFSLENSGEPTDTPNLDKPIIARDYELEWSDTSCTVPKEYQNKKCNNLRHEVLQLVDPNNKDFKNRKILIHVGNSAHDTLGCVLLGMQHDEEMIYKSSEAVKKFFDLVKDKGVNNFLFKVIDKA
Physico‐chemical
properties
protein length:181 AA
molecular weight: 20889,65070 Da
isoelectric point:6,65644
aromaticity:0,08287
hydropathy:-0,60773

Domains

Domains [InterPro]
IPR043732
STR
15–166
IPR043732
BEH82812.1
1 181
Architecture
STR
STR 15-166 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Helicobacter phage KHP40
[NCBI] 		1204178 Uroviricota > Caudoviricetes > Schmidvirus >
Host Helicobacter pylori
[NCBI] 		210 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BEH82812.1 [NCBI]
Genbank nucleotide accession
LC767349.1 [NCBI]
CDS location
range 21588 -> 22133
strand +
CDS
ATGTATTTAGTCTTACTGGAAAGAAAACACGATTTAAGGCCTCTAGTGAGAAAAGACAAGAAAGAAAGCGGCATGTTAGGAAATTTTAGCGTGTTTGAAAGCACGCACGATCAAGGCATAAGCGATAAAGCGATAATCAAACACTACGAAAAAGAAAAAGCCTTATTCAGTTGCTTTTCATTAGAAAACAGCGGAGAGCCAACAGATACGCCGAATTTAGATAAGCCGATAATAGCGAGAGATTACGAGTTAGAGTGGAGCGATACGAGTTGCACGGTGCCTAAAGAATACCAAAATAAAAAATGCAATAACTTACGCCATGAAGTGTTACAGCTAGTAGATCCCAATAACAAGGATTTTAAAAACCGAAAAATTTTAATCCATGTAGGAAACAGCGCGCATGATACTTTAGGGTGTGTTCTGTTAGGAATGCAACACGATGAAGAGATGATTTATAAAAGCAGCGAAGCGGTAAAAAAGTTTTTTGATTTAGTCAAAGACAAAGGCGTTAATAACTTTTTGTTTAAGGTGATTGATAAGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f088ae31414744aa7b2e9050cbb9c0d5bbb1b474c1af7601d34ad61418e058ad
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9556
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of lifecycle of Helicobacter pylori bacteriophage KHP40 belonging to genus Schmidvirus Iwamoto,M., Maeda,H., Kitamura,N., Takahashi,M., Takada,R., Takeuchi,H., Uchiyama,J., Nagasaki,K., Hanazaki,K., Matsuzaki,S. and Yamamoto,T. 2024 — GenBank