Protein

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Genbank accession
AFU62927.1 [GenBank]
Protein name
phage particle protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERHEVKNPVGLNTDIAPADLPLTEWSYGNNIRFKNGKAQKALGYQTIFDSDFSVLQLFPYIKNNIPYWLLATKDKIYAADGTSIIDVSPGLTFHADESNNWIGSSLNGAIIMNNPVDGPYAMAPELGGFQALPNWPANTQCKVMRPYKNYLIALNITKNSVEMPQLVKWSSPADPGGVPGTWDETDPKNDAGENPLADTNGKIVDGKKLRDAFIIYKEDSVYSMRFIGGVYVFQFQQLFDDVGMLGPNCAVEFDGKHFVVGQGDIYVHNGVEKKSIIDGKMRKFFFNDISSENYRKTFVVSDTVNTEMWVCYSSTKMTEGAFCDRALIWNWSEDTWSIRDMPNVISGDYGIIDPKESNMWDDDNNAWDTDTTVWGAGTYNPSKRKLIFASNVDKKMFLFGEIATFNNQPFLSFLERTDMYLGEDRMMKTMSSIIPHISGNGTCRIYVGGAAVQGGAIRWKGPIPYTIGTDYKIDCKHVGRYVALRFEFDSTGDWAFNGYTAEYAPNAGMR
Physico‐chemical
properties
protein length:513 AA
molecular weight: 57540,31410 Da
isoelectric point:5,06978
aromaticity:0,12671
hydropathy:-0,35341

Domains

Domains [InterPro]
DC_0191
STR
7–513
DC_0191
AFU62927.1
1 513
Architecture
STR
STR 7-513
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFU62927.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 371 371 0,6594
Central domain 372 502 132 0,1623
C-terminal 503 513 10 0,9940
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-371
Central
372-502
C-terminal
503-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage UFV-P2
[NCBI] 		1235661 Uroviricota > Caudoviricetes > Vicosavirus >
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFU62927.1 [NCBI]
Genbank nucleotide accession
JX863101 [NCBI]
CDS location
range 34570 -> 36111
strand -
CDS
ATGGCCCTTGAAAGACATGAGGTGAAAAACCCTGTTGGGTTGAACACTGATATCGCCCCTGCCGACCTGCCGTTAACCGAGTGGTCCTACGGGAACAACATTCGGTTTAAGAACGGTAAGGCTCAGAAGGCCTTGGGCTATCAAACCATCTTCGATTCGGATTTCTCTGTACTCCAACTGTTCCCGTATATCAAGAATAACATCCCCTACTGGCTCTTAGCCACGAAGGATAAGATCTACGCAGCAGATGGTACAAGCATCATTGACGTATCTCCGGGTTTGACCTTCCATGCTGATGAGTCGAACAACTGGATTGGTAGTTCCCTGAACGGGGCTATCATTATGAACAACCCTGTTGATGGCCCTTACGCTATGGCTCCAGAACTCGGTGGCTTCCAAGCCCTTCCGAACTGGCCTGCCAATACCCAGTGCAAGGTCATGCGTCCGTACAAGAACTACCTGATTGCTCTGAACATCACTAAGAACTCTGTGGAAATGCCCCAGCTTGTCAAGTGGTCTTCCCCAGCTGATCCCGGTGGTGTCCCGGGTACATGGGATGAGACGGACCCTAAGAACGACGCTGGTGAGAATCCACTGGCTGACACCAACGGTAAGATCGTAGACGGCAAGAAGCTCCGAGACGCCTTCATCATCTACAAAGAAGACTCGGTATACTCCATGAGATTCATCGGTGGTGTGTACGTCTTCCAGTTCCAGCAACTGTTTGATGACGTTGGTATGCTTGGTCCGAATTGTGCAGTTGAGTTTGATGGTAAGCACTTTGTCGTAGGGCAGGGTGATATCTACGTTCACAACGGTGTCGAGAAGAAGTCGATCATCGATGGGAAGATGCGTAAGTTCTTCTTCAACGATATCAGTTCTGAGAACTACCGTAAGACCTTCGTGGTTTCAGATACAGTCAATACTGAGATGTGGGTGTGCTACTCGTCCACTAAGATGACTGAGGGTGCCTTTTGTGATCGTGCCTTGATCTGGAACTGGAGCGAAGATACTTGGTCTATCCGAGACATGCCTAATGTGATCTCCGGGGACTACGGCATCATCGACCCTAAAGAGTCCAACATGTGGGACGACGACAACAACGCTTGGGATACTGACACCACAGTGTGGGGTGCTGGTACTTACAACCCATCGAAACGTAAGCTAATCTTTGCCTCGAACGTTGATAAGAAGATGTTCTTGTTTGGTGAGATTGCAACCTTCAATAACCAACCTTTCCTATCCTTCCTAGAACGGACGGACATGTATCTTGGGGAGGACCGTATGATGAAGACGATGAGTTCAATCATCCCCCACATCAGTGGTAACGGTACTTGCAGGATCTACGTTGGTGGGGCAGCAGTACAAGGTGGTGCTATTAGATGGAAGGGGCCTATCCCATACACCATTGGCACTGACTATAAGATCGACTGCAAACACGTGGGACGCTATGTTGCCCTTAGGTTCGAGTTTGACTCAACTGGCGACTGGGCCTTCAATGGCTATACCGCGGAGTATGCACCAAACGCAGGCATGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
154ff771459aaae58f498ba80a2a9aaa1d2056139e18461bba4710a48c061aaa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8968
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of the Pseudomonas fluorescens Bacteriophage UFV-P2 Eller,M.R., Salgado,R.L., Vidigal,P.M., Alves,M.P., Dias,R.S., de Oliveira,L.L., da Silva,C.C., de Carvalho,A.F. and De Paula,S.O. 2013 23405322 GenBank