Protein

View in Explore
Genbank accession
AYR04289.1 [GenBank]
Protein name
putative pre-neck/exonuclease
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAFKKIPLTIDTMIRNPVPIEGINQEDNVELNIVVTENKTPKDLSRQTIKVYVRRIDGTLVEQTDQITPTNASKGEVTVKLKNSAFNKEGYALFQLDVSDSSGRITSSYATFKIGKGLASGEAIANTNEVEALKKIEEYIKKANLEFPKYENKINEFNQKTEEYKNEVVEYQGEVKKFQNIANSLQTQFDEAVANITNGVESATNSEIVQARGGEVNLNRRLDKFDSQLDKIVQGINGENTVIEENFLNIRKLNLYGTYVLNKQITLSNIVLVGNATIYQNGNIIDINDNVTLHGLKFELNNVDIKTSLNINGKNISIANCEIRNLYSSTYGRMIFISKDSENINIKQNVFNGLNVNINNIVGDTNGSIRAIQCQEAYNVIIENNIFKNINTREDSDYIHCQSTTSEDIDGVSFFKKGKILIKDNLFINPLKSVIKIQCSGVEVINNKIESDNVNYVDVFFRFYNSYDLKISNNYNSDTIECTFIYQEENTKNTIINNNKFNIRKPTSYSGSIFYLMSTNSKSMIIENDAVLTNGNSLLQLKKSNNVVIKNNLYDYTEIQIQGNYNTSILNNTTTNEINSFVDLSALDGISNSKITIEDNNVFKTERLANIRGNGHVGIYIINNSIKNEGNSFNAIAIFDETQILNNIFIENNQCSTLRYGATNKRPTSFNKRIGYNYFDVTLNKNIVWNGSSWVDYNGTSV
Physico‐chemical
properties
protein length:702 AA
molecular weight: 79235,82460 Da
isoelectric point:5,43741
aromaticity:0,08689
hydropathy:-0,43348

Domains

Domains [InterPro]
DC_0660
STR
7–702
DC_0660
Coil
Unmapped
133–188
Coil IPR012334
IPR011050
STR
256–477
IPR011050
AYR04289.1
1 702
Architecture
STR
STR 7-702
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYR04289.1
1 702
Domain Start End Length (AA) Confidence
N-terminal 1 280 280 0,9899
Central domain 281 654 375 0,9889
C-terminal 655 702 47 0,9657
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-280
Central
281-654
C-terminal
655-702

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD1
[NCBI] 		2420238 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYR04289.1 [NCBI]
Genbank nucleotide accession
MH999280 [NCBI]
CDS location
range 4806 -> 6914
strand +
CDS
ATGGCATTTAAAAAGATACCTTTAACTATTGATACTATGATAAGAAATCCAGTGCCAATTGAAGGGATAAATCAAGAAGATAATGTAGAATTAAATATAGTTGTAACTGAAAATAAGACACCTAAAGACCTATCCAGGCAGACTATAAAGGTTTATGTTAGGCGTATAGATGGGACTTTAGTAGAACAAACTGACCAAATAACTCCAACTAATGCAAGTAAAGGAGAGGTTACTGTTAAGTTAAAAAATAGTGCTTTCAATAAAGAGGGCTACGCGTTATTTCAATTAGATGTATCGGATTCTAGTGGTAGAATAACAAGTTCATATGCTACTTTTAAGATAGGAAAAGGGTTAGCTAGTGGTGAGGCTATCGCTAATACAAATGAGGTTGAAGCGTTAAAGAAAATAGAAGAATACATCAAAAAGGCTAATTTGGAATTTCCTAAGTATGAAAATAAAATAAATGAGTTTAATCAAAAAACAGAAGAATATAAAAATGAAGTCGTTGAGTACCAAGGGGAAGTAAAAAAGTTTCAAAATATTGCCAATTCATTACAAACGCAATTTGATGAAGCGGTAGCTAATATTACTAATGGGGTTGAAAGCGCAACTAATAGTGAGATAGTTCAAGCTAGAGGAGGAGAAGTCAATTTAAATAGAAGATTAGACAAATTTGATTCACAATTGGATAAAATTGTTCAAGGAATTAATGGCGAAAATACAGTTATTGAAGAAAATTTTTTAAATATTAGAAAATTAAATTTATATGGAACATACGTATTAAATAAACAAATAACATTATCAAATATAGTCTTAGTAGGCAACGCTACTATTTATCAAAATGGTAATATAATTGACATAAATGATAATGTAACACTACATGGTTTGAAATTTGAGTTAAATAACGTTGACATAAAAACATCACTTAATATAAATGGTAAGAATATAAGTATAGCAAACTGTGAAATACGTAATTTATATTCTTCTACTTATGGGAGAATGATATTTATTTCTAAAGATAGTGAAAATATTAACATTAAACAAAATGTGTTCAACGGATTAAATGTAAATATAAACAATATCGTTGGTGATACAAACGGAAGTATAAGAGCTATCCAATGCCAAGAAGCGTATAATGTTATAATAGAAAACAATATATTTAAAAATATAAATACGAGAGAGGACAGTGATTATATACATTGTCAATCAACAACAAGTGAAGATATAGATGGTGTTAGTTTTTTTAAAAAAGGTAAAATATTAATAAAAGATAATTTGTTTATTAATCCGTTAAAATCTGTAATAAAAATTCAGTGCAGTGGTGTTGAGGTTATAAATAACAAGATTGAAAGTGATAATGTCAATTACGTTGATGTATTTTTCAGATTTTATAATTCTTATGACTTAAAAATAAGTAATAATTATAATAGTGACACTATCGAATGTACTTTTATATACCAAGAAGAAAATACAAAAAACACAATCATAAACAATAATAAATTCAATATAAGAAAGCCAACAAGTTATAGTGGTTCAATTTTTTATTTAATGTCAACTAATAGTAAGTCTATGATTATTGAAAATGATGCCGTCTTGACAAATGGTAATTCGCTACTTCAACTAAAAAAATCTAATAATGTTGTTATAAAAAATAATTTATATGATTACACAGAAATACAGATTCAAGGTAATTATAATACATCAATATTAAATAATACGACCACAAATGAAATAAATAGTTTTGTAGATTTAAGTGCGTTAGATGGTATCAGTAATAGTAAAATAACCATTGAAGATAATAATGTTTTTAAAACTGAAAGACTTGCAAATATTAGAGGTAACGGTCATGTTGGAATATATATAATTAATAATAGCATAAAAAATGAGGGTAATTCGTTTAATGCAATAGCTATTTTTGATGAAACACAAATATTAAATAATATATTCATTGAAAATAATCAATGTTCAACATTAAGATACGGGGCTACTAATAAACGCCCGACTTCTTTTAATAAAAGAATAGGATATAATTATTTTGATGTAACATTAAATAAAAATATTGTTTGGAATGGTTCTTCGTGGGTTGATTATAATGGTACAAGTGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f2fc3086542061e656417935c158a8e163c642e4413a61392bfc9ad279b484d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7599
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD1 Shin,D. and Ryu,S. 2022-11-17 — GenBank