Protein

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Genbank accession
QOC57855.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANTIKTVMTYPLNGSTVDFNIPFEYLARKFVTITLIGTDRKVLVLNQDYRFSTKTTITLTKAWGPADGYDTIEVRRYTSATDRLVDFADGSILRAYDLNIAQVQTLHVAEEARDLTADTIGVNNDGNLDARGRRIVNVGDAVGDYDAINLHMMKTWNTSALNSANAAAASQAAAKTSENNSKTSENNAKTSENNSKTSENNAYQWAQRAEDSPVQGSEFSAYHYSRKSAKSAAAASTSEGNASVSERNAKTSENNAKTSETNAATSAQTAKDEAAKLTNMNGFAAAIDSVSGNNVVMKGDFTSKGTVSANKVVVNGPSALNLKPSDWIDITGNYVTDNNYATNGLRYWLRGNQRADVFAFESVGNHHTLSFHVYQTTGVGAFYEMRHNGYFVGPALSMTGAPGSYESRFAHNIIIQFPNGNGHRYQENGDIVRVGGNNSIFAEWNGVLSGFMNTCVLEVYLGGQEWWQTSRNRGRTDYALGGGHVCTGYTQDSTNNNVIWLDGMFHRAVWCRFAGNRRVIINSA
Physico‐chemical
properties
protein length:525 AA
molecular weight: 57244,33050 Da
isoelectric point:6,60989
aromaticity:0,09524
hydropathy:-0,47676

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0657
STR
1–521
DC_0657
QOC57855.1
1 525
Architecture
ATT
STR
ATT 1-131 | STR 132-521 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOC57855.1
1 525
Domain Start End Length (AA) Confidence
N-terminal 1 174 174 0,9191
Central domain 175 373 200 0,7490
C-terminal 374 525 151 0,8132
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-174
Central
175-373
C-terminal
374-525

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEp_SNUABM_12
[NCBI] 		2772019 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ningirsuvirus
Host Erwinia pyrifoliae
[NCBI] 		79967 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOC57855.1 [NCBI]
Genbank nucleotide accession
MT822288 [NCBI]
CDS location
range 38392 -> 39969
strand +
CDS
ATGGCGAATACCATTAAGACCGTTATGACTTACCCGCTGAATGGCTCGACTGTGGATTTCAATATTCCCTTTGAGTATCTGGCCCGTAAGTTCGTGACGATTACCCTGATTGGTACTGACCGTAAAGTGTTGGTGCTTAATCAGGATTACCGATTCTCTACGAAGACCACCATCACCTTAACGAAGGCATGGGGTCCTGCTGATGGTTACGACACCATTGAGGTTCGTCGTTACACCTCTGCGACAGACCGTCTGGTTGACTTTGCGGATGGTTCGATTCTCCGTGCGTATGACCTTAACATCGCTCAGGTGCAAACGCTCCACGTTGCTGAGGAAGCACGAGACCTGACTGCGGACACTATCGGTGTGAACAACGATGGTAACCTTGATGCTCGTGGTCGTCGTATCGTGAACGTAGGTGATGCTGTAGGTGACTATGATGCTATCAACCTGCACATGATGAAGACGTGGAACACCTCTGCGCTTAACTCTGCGAACGCTGCTGCTGCCTCTCAGGCCGCTGCCAAGACCTCTGAGAACAACTCGAAGACCTCTGAGAACAATGCCAAGACCTCTGAGAACAACTCGAAGACCTCTGAGAACAATGCGTACCAATGGGCGCAACGTGCAGAGGACTCTCCGGTGCAGGGTAGCGAGTTCTCCGCATACCACTACTCACGTAAGTCAGCTAAGAGTGCTGCTGCTGCGAGTACCTCTGAAGGTAACGCCTCTGTATCTGAGCGCAACGCTAAGACCTCAGAGAACAACGCGAAGACCTCTGAGACCAACGCTGCGACCTCTGCTCAAACCGCTAAGGATGAGGCGGCTAAGCTGACCAACATGAATGGTTTTGCTGCTGCTATTGATTCTGTAAGTGGCAATAACGTGGTCATGAAAGGTGACTTCACATCTAAAGGGACGGTTAGTGCAAATAAGGTTGTTGTTAATGGCCCAAGCGCACTTAACCTTAAGCCGTCTGATTGGATTGATATCACAGGGAACTATGTCACAGATAACAACTATGCAACGAACGGCTTGCGTTATTGGCTGCGTGGTAATCAGAGAGCGGATGTATTCGCCTTTGAGAGTGTTGGTAATCACCACACATTGAGCTTCCATGTGTACCAGACCACTGGTGTTGGTGCTTTCTATGAGATGCGCCATAATGGGTATTTTGTCGGGCCAGCATTAAGCATGACTGGTGCTCCGGGTTCGTATGAGTCCAGATTCGCACACAACATCATTATCCAGTTCCCTAATGGTAATGGTCACCGATACCAAGAGAATGGCGACATTGTGCGTGTTGGGGGGAATAACTCTATCTTTGCGGAATGGAATGGCGTCCTATCTGGCTTTATGAATACCTGCGTGCTTGAAGTGTACCTTGGTGGGCAGGAATGGTGGCAGACCTCACGTAATAGAGGACGTACTGACTACGCCTTGGGTGGCGGTCATGTATGCACAGGTTACACGCAAGACTCCACCAATAATAACGTTATCTGGCTCGATGGGATGTTCCACAGGGCTGTATGGTGCCGCTTCGCCGGTAACCGCCGTGTCATTATCAATAGTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1256729aae25b3f8d30afbbd451eb30650cfa01a3067f385ec067d0c0cef7163
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6994
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of novel Erwinia phage pEp_SNUABM_12 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank