Protein

View in Explore
Genbank accession
YP_009848214.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQFLTFFEDQPRAGAELAITSAFAIGDSLAHGTYIYNGGLGHEESIARQGTGGTLLQSSGFQIFRPGGVSAGEAISRAWGLMGFPTGVSTVPIDGGNADYWEPNWQAPIGSAGRGHDWFYVCSSNIRGFAGKKGVLPDNVNVLYQSPAYPEKIYVCRGSTSNMAAQSARKVYVQDWYNVTPTKVIWYVLNLRYSNGSMGISGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPGNVASTYVGDDITPSYPGAGDFYTPLATVWLGLPNAHSTVILTTEVIMGNLNTAGMPVRTYGGSAWQVQGRRQQSYTAGDGVFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEMAFRRNGYIYTVKNLGNGNVELGVIIHAAEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 63955,67340 Da
isoelectric point:6,41510
aromaticity:0,12310
hydropathy:-0,17032

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
YP_009848214.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009848214.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5895
Central domain 11 240 231 0,8439
C-terminal 241 593 352 0,7383
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-240
C-terminal
241-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_SB13
[NCBI] 		2591135 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus SB13
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009848214.1 [NCBI]
Genbank nucleotide accession
NC_048781 [NCBI]
CDS location
range 110722 -> 112503
strand +
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCCTTCGTCCTAGTTGATGGGACTTATGAGGCTGCCCTAGGTGATGCAGGCAATGGGTATTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATACTAACTGCTATTGAGATAAACGGTACTCATCGTGGCTTTCTGAATGGTACACAATCTCAGGTTGGCCAATTCTTAACATTCTTCGAAGATCAACCACGTGCTGGTGCTGAACTGGCTATAACATCTGCTTTTGCAATCGGTGATAGTTTAGCTCACGGTACTTATATATATAATGGTGGTCTTGGTCATGAGGAATCTATTGCTAGGCAAGGAACTGGTGGTACTTTACTACAATCTTCCGGTTTCCAGATCTTTAGACCTGGTGGTGTTTCCGCAGGTGAAGCTATTTCCAGAGCCTGGGGATTAATGGGCTTTCCAACGGGTGTATCTACAGTTCCTATAGATGGTGGTAATGCAGACTATTGGGAGCCTAACTGGCAAGCGCCTATCGGGTCTGCTGGTAGAGGTCATGATTGGTTTTACGTTTGTAGTTCCAATATTCGTGGCTTTGCCGGTAAAAAAGGTGTACTACCAGATAACGTAAACGTTCTTTACCAATCTCCTGCATATCCAGAAAAAATATATGTTTGTAGAGGTTCTACTTCTAATATGGCTGCTCAGTCAGCTAGAAAGGTATATGTGCAAGACTGGTATAATGTTACACCTACTAAAGTTATTTGGTACGTGTTAAATCTACGTTATTCTAACGGTAGTATGGGGATCTCTGGTAACCCATTTACTGGTTCAGATATCTTGATATCTCCCTCTAACTTTACTATTAAAGGTGTTAGCTTACCAAATACAGGCTATAAATTTATTAACCAGAATGCTTTCGGAAACTTAGGCTATCGCCCTGATATGGAGTATGTTGGTAATAACGCTGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATCGGCTCTAGTAATGGCGGGTTGTGGTCTCCTGTTAACTATGGAGGTGCTGCTTCTCAAATTAGCCTTTATAAATTTGGGGTGGGTAAACAATGGTACGTAGATACTAATACCAATTCAATTGGTAATGAACATGGCCCTGTATGGAGTCCTAGTACTGTACCTCTCAGGCTATTCCCAGGCAACGTTGCAAGTACTTACGTAGGGGACGATATAACTCCATCCTACCCTGGTGCTGGTGACTTCTACACACCTTTGGCTACAGTTTGGTTGGGATTACCAAATGCTCACTCTACTGTTATATTAACCACTGAAGTTATTATGGGTAACCTTAATACTGCTGGTATGCCTGTACGTACTTATGGGGGTAGTGCTTGGCAGGTACAAGGTAGACGTCAACAAAGTTATACAGCTGGTGATGGTGTATTTCATCAGATTCTTACTCTGCCACCTGGCTATCTAGTACCATATCACAGTACAACTTCATATAGCTATACCCAAACGTGGGCTAGTAGACCTGATGAGATGGCTTTTCGTAGAAATGGGTATATTTATACAGTAAAAAACCTTGGTAATGGTAACGTTGAGTTAGGCGTTATTATCCATGCTGCCGAAGCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
05dfb93bc7e7c066c005ceb368155c2b4ce1f00b7d69bfa494b123fc61ea69b7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2264
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence analysis of broad host range Salmonella enterica bacteriophages Bhandare,S.G., Colavecchio,A., Emond-Rheault,J.-G., Hamel,J., Kukavica-Ibrulj,I., Boyle,B., Levesque,R.C. and Goodridge,L. 2024-03-29 — GenBank