Protein

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Genbank accession
QJT70047.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALANINIIPEDRASGAMVINQSLRFSGSERLTRTFGTNSGTTWTWSAWIKRSDLSTGDQQIFGTTSPLQFHHIRSNNFGWTQSSVAQNETDLRRDASAWYHRLDVSNGTNIKMFINGELALTWTQASVGTNTNVEHLLGGDSGRASEFFKGYLADVYLIDGQELTATDFGFTDPLTNTWRPKKYEGTFGDNGFHLDFSDPDDIGADRSGRGNDWTPSGFSAVDVMKDSPSGVAYGSVPTSGITTTNTASSNYCTLNFLDAADNNGLGEGNLKCGTTTAANTTSIRGTLSVSSGKWYFEVQKITSGTINIQCGWAAISLAHKFTTSDTGVYNKVISGTTVMIAADFDRNAIWTGVDGTWDNSATVAEIESGDTSNATHTSVSNYPLAPMFLDQAFSFSGEARFNFGQRDFTHTPPSGYKPLCAANLPRLSEIALQPEKYFKTVIWDGSGTNNRPVDVGFQPGLVWIKNRNDTQDHVIVDSIRGNAAFLTTNDPDPTGDSGNVVRSFESNGVTLGTNARTNASASSRTYVGWFWKAGGAAVANNDGNTRSNISVNQEAGFSIIDYDGAGNGTTIGHGLGKKPEFILFKATGSPDSTNQNWNVYHHDITADNVLFLNLDNASTDDAGFMADTEPTDSIIHLGSSFSVSHTGSDYIAYAWTSIEGYSKFGSYTGNADGSSPNSNGPFVNLGFKPAFILFKRTDSNSGGEWSIYDSTRKTTNANRTLLLADLNNAETTSDGVDFLSNGFKVRAGSGTFINQAGTYIYAAFAEAPTFNLYGGQANAR
Physico‐chemical
properties
protein length:782 AA
molecular weight: 84137,82870 Da
isoelectric point:4,93501
aromaticity:0,10997
hydropathy:-0,39706

Domains

Domains [InterPro]
G3DSA:2.60.120.200
STR
11–170
G3DSA:2.60.120.200 DC_1713 IPR055906
IPR013320
STR
16–161
IPR013320 IPR043136
PF13385
LEC
40–161
PF13385
QJT70047.1
1 782
Architecture
STR
STR
STR 11-428 | STR 436-770 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJT70047.1
1 782
Domain Start End Length (AA) Confidence
N-terminal 1 114 114 0,1099
Central domain 115 313 200 0,0576
C-terminal 314 782 468 0,8945
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-114
Central
115-313
C-terminal
314-782

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage SynMITS9220M01
[NCBI] 		2736186 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MIT S9220
[NCBI] 		166309 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJT70047.1 [NCBI]
Genbank nucleotide accession
MT408532 [NCBI]
CDS location
range 31808 -> 34156
strand +
CDS
ATGGCACTAGCAAACATTAATATAATTCCAGAAGATAGAGCCTCTGGTGCAATGGTTATTAATCAGAGTTTGCGGTTTAGTGGTTCTGAGCGTTTAACAAGAACCTTTGGCACTAATAGTGGCACTACTTGGACTTGGAGTGCTTGGATTAAAAGGTCTGACTTAAGCACAGGAGATCAACAGATCTTTGGTACTACTTCTCCGCTTCAGTTTCATCATATCAGAAGCAATAATTTTGGTTGGACTCAATCATCAGTTGCTCAAAACGAAACAGATCTCCGCAGAGATGCAAGCGCTTGGTATCACCGTCTGGATGTATCTAATGGCACAAATATCAAAATGTTTATTAATGGGGAGCTTGCTTTAACTTGGACTCAAGCCTCCGTTGGCACTAATACAAACGTTGAACACCTTCTTGGTGGGGACTCTGGCAGAGCATCTGAATTTTTTAAGGGATACTTAGCCGATGTCTATCTCATCGACGGTCAAGAACTAACTGCTACTGACTTTGGTTTTACTGACCCACTCACAAATACTTGGAGACCTAAAAAATACGAGGGAACATTTGGAGATAATGGTTTCCACCTTGATTTCTCAGACCCAGATGATATAGGTGCTGATAGGTCTGGTAGAGGAAATGACTGGACTCCAAGTGGTTTCAGTGCTGTTGATGTAATGAAGGATAGTCCATCAGGTGTTGCTTATGGTAGTGTGCCAACATCTGGTATCACCACAACTAATACTGCTTCTTCAAATTATTGCACGTTGAACTTTTTAGATGCAGCAGATAACAACGGACTTGGTGAGGGCAACCTTAAGTGTGGAACAACTACCGCAGCAAATACGACTTCAATTCGAGGCACATTATCCGTAAGCAGTGGAAAATGGTATTTTGAGGTTCAAAAGATTACGTCAGGGACAATCAATATCCAATGTGGATGGGCAGCAATCAGTCTTGCTCACAAGTTTACTACTAGTGACACAGGAGTTTATAATAAGGTTATTAGCGGCACCACTGTGATGATCGCTGCTGATTTTGATCGCAACGCTATTTGGACTGGAGTTGATGGCACTTGGGATAACTCTGCAACTGTAGCAGAGATAGAATCTGGTGACACGTCTAATGCAACACATACAAGTGTTTCAAATTATCCTCTTGCTCCAATGTTTTTGGATCAGGCATTTTCTTTTTCTGGTGAAGCTAGATTTAATTTTGGTCAAAGAGATTTTACACATACTCCTCCAAGCGGATACAAACCGCTGTGTGCTGCCAATCTCCCCCGCCTTTCAGAGATAGCATTACAACCTGAAAAGTATTTCAAAACAGTTATTTGGGATGGCAGCGGCACCAATAACAGACCTGTTGATGTGGGTTTCCAACCTGGTTTAGTATGGATCAAGAATCGAAATGACACTCAAGATCATGTAATAGTTGATTCTATAAGAGGTAATGCAGCGTTTCTTACTACTAATGATCCTGATCCTACGGGAGATAGTGGCAACGTTGTACGTAGTTTTGAATCCAATGGAGTTACATTAGGCACAAATGCAAGGACCAATGCTTCTGCTAGCAGTCGTACTTATGTTGGTTGGTTTTGGAAAGCAGGCGGCGCCGCTGTGGCCAACAATGATGGAAACACAAGATCAAATATATCTGTTAACCAAGAAGCAGGTTTTTCAATTATTGATTATGATGGTGCAGGAAATGGTACTACAATTGGTCATGGACTCGGAAAAAAACCAGAGTTCATATTGTTTAAAGCAACGGGATCACCAGATAGCACTAATCAAAATTGGAATGTATATCATCATGATATTACTGCCGACAATGTATTGTTCCTCAACCTAGACAATGCATCCACTGATGATGCTGGTTTCATGGCTGATACTGAACCAACTGATTCTATTATTCATCTTGGTAGTAGTTTTAGTGTAAGTCATACTGGAAGTGATTACATCGCTTATGCGTGGACTTCGATAGAGGGCTATTCAAAATTTGGTTCGTACACGGGTAACGCTGATGGATCATCACCTAACTCCAATGGCCCGTTCGTAAATTTGGGCTTCAAACCTGCTTTTATTCTGTTCAAAAGAACTGACAGCAATAGTGGTGGAGAGTGGTCTATTTATGACAGCACTAGAAAAACTACAAACGCAAACAGAACATTACTGCTTGCAGACCTTAATAATGCAGAAACCACATCAGATGGCGTAGATTTTTTGTCTAATGGATTCAAAGTAAGAGCAGGATCTGGCACTTTCATTAATCAAGCTGGCACTTATATTTACGCCGCCTTCGCAGAAGCACCTACATTTAACTTATATGGTGGTCAAGCAAACGCAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d7b1025e970aca462991a32cb2bc4d70ae16ce3f0552a4a2913b64d65fae020e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2993
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Synechococcus sp. MIT S9220 and co-cultured Thalassospira bacterium and cyanophage Ahlgren,N.A. and Belisle,B.S. 2020-07-23 — GenBank