Protein

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Genbank accession
YP_009811911.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 0,93
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MASANVLRTIFTYPISGLGPYTIAFDYLARKFVQVTLLGPDRKLLVLGTDYRFIATKQIQLINAAPAGYGQIEIRRYTDAQDRLVDFQDGSILRATDLNVSQVQTMHIAEEGRDVAGNTLGVDSDGNLDARLRKMVNLLDGVLDGDAVTIRQMKTWSESALNQAGIAKQQADAASASASAAKTSETNSATTAGNSANSATLAQKWAANPQGVLVDASKYSAYHYALASEQSATSAQGSAQSSNQDAQATAADRVQTGLDRVASDASATKAEQEAAKLGNMNDLADSIHKVGTDSLVTFKRGVSGQVISINDATNKDLSLWSFSPMTVAGLEGALGIGPNYNNVPIGNRKIVIDANVWCNDLSTGTLRLRDKASDFTKEFNFSFGSGSVIQVNRTQNIGTLNWSNLNFTNINALDITNNFSAKGGVSAYAATGSLINQGGPTLASSIRDGGTPGGRVRANFDMWVRGAENGQRQGVVRVHGDDMSGEQNWIFIGDGGSAGRISGSAGSVLTDRYPTSDARLKTIDGDSDLEESGKRLDALEFKDYHWNNHEYNKQVGLSTDVQEHGVIAQQAMQVDPRYVEVNEQILGTIYENRSFDKHVLNWMPMLLDTMAAVKQLRARVKELEAQLNKEE
Physico‐chemical
properties
protein length:631 AA
molecular weight: 67898,59570 Da
isoelectric point:5,32021
aromaticity:0,06656
hydropathy:-0,35848

Domains

Domains [InterPro]
DC_0657
STR
1–622
DC_0657
IPR005604
ATT
20–130
IPR005604 IPR030392
IPR030392
CHP
516–579
IPR030392 Coil
YP_009811911.1
1 631
Architecture
STR
ATT
STR
STR 1-19 | ATT 20-130 | STR 131-627 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811911.1
1 631
Domain Start End Length (AA) Confidence
N-terminal 1 286 286 0,9623
Central domain 287 485 200 0,4006
C-terminal 486 631 145 0,9859
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-286
Central
287-485
C-terminal
486-631

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage Katbat
[NCBI] 		2320191 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Aarhusvirus
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811911.1 [NCBI]
Genbank nucleotide accession
NC_048057.1 [NCBI]
CDS location
range 33613 -> 35508
strand +
CDS
ATGGCAAGTGCTAACGTGCTGCGAACAATCTTCACGTACCCTATTAGCGGCCTTGGGCCATATACCATTGCGTTTGACTATCTGGCCCGTAAGTTTGTCCAAGTGACTCTCTTAGGTCCTGACCGTAAGCTTCTGGTGTTGGGTACTGATTATCGCTTTATTGCAACCAAACAGATTCAGCTCATCAATGCTGCTCCTGCTGGTTATGGTCAGATTGAGATTCGTCGTTATACAGATGCTCAGGACCGATTGGTTGATTTCCAAGATGGCTCAATCCTTCGAGCTACAGACCTTAACGTTTCTCAGGTTCAGACAATGCATATTGCTGAAGAGGGACGTGATGTGGCCGGTAATACCCTTGGCGTTGACTCTGATGGTAACCTTGATGCTCGTCTCCGTAAGATGGTGAACCTGCTTGATGGTGTACTTGATGGCGACGCTGTGACTATCCGTCAGATGAAGACTTGGAGTGAGTCCGCTTTGAATCAGGCCGGTATCGCTAAGCAACAGGCTGATGCTGCAAGTGCTTCTGCAAGTGCCGCTAAGACCTCAGAGACTAACTCTGCAACTACTGCTGGTAACTCTGCGAACTCTGCAACACTGGCTCAGAAGTGGGCAGCGAACCCTCAGGGTGTTCTTGTGGATGCCTCTAAGTACTCAGCATATCACTATGCTCTGGCCTCTGAGCAGTCTGCTACGAGTGCTCAAGGCTCAGCTCAAAGCTCCAATCAGGATGCTCAGGCTACTGCTGCTGATAGAGTTCAAACAGGTCTTGACCGTGTAGCTTCTGATGCTTCAGCCACTAAGGCAGAGCAGGAGGCCGCTAAGCTCGGCAATATGAATGACCTCGCGGATTCAATCCATAAGGTTGGCACTGACAGCCTCGTTACGTTCAAGCGTGGTGTAAGCGGTCAGGTAATTTCTATCAATGATGCTACCAATAAAGACCTTTCACTGTGGTCATTTAGTCCAATGACTGTAGCAGGTCTTGAGGGGGCATTAGGCATTGGTCCTAACTATAACAATGTCCCTATTGGAAATCGCAAGATTGTGATTGATGCAAACGTATGGTGTAATGATTTATCTACTGGAACGCTTAGATTGCGTGATAAGGCATCTGACTTCACTAAAGAGTTCAACTTCTCATTTGGTTCAGGTAGTGTTATTCAAGTAAATAGAACTCAGAACATTGGTACGTTAAACTGGAGTAATCTTAACTTCACCAATATCAACGCTCTTGATATCACCAACAACTTCTCTGCAAAAGGTGGTGTTAGTGCATATGCCGCTACTGGCTCTCTTATCAACCAAGGAGGTCCGACACTCGCGTCCTCAATTAGAGATGGGGGAACTCCCGGTGGTCGCGTTCGCGCTAACTTTGATATGTGGGTGCGTGGTGCAGAGAATGGGCAGCGACAAGGTGTTGTAAGGGTCCATGGTGATGATATGTCTGGTGAGCAAAACTGGATTTTCATTGGTGATGGTGGTAGTGCTGGTCGAATCTCTGGCTCTGCTGGTTCCGTTCTCACCGATAGATACCCAACGTCTGACGCCAGATTGAAGACCATTGATGGCGACTCAGACCTTGAGGAATCTGGTAAGCGTCTTGATGCTCTGGAGTTTAAGGACTATCACTGGAACAATCATGAGTATAACAAGCAGGTTGGACTGAGTACTGACGTTCAGGAGCATGGTGTTATTGCTCAGCAGGCTATGCAGGTTGACCCTCGTTATGTTGAGGTTAATGAGCAAATCCTTGGGACCATCTATGAGAACCGTTCTTTTGATAAGCACGTTCTGAATTGGATGCCTATGCTGCTGGATACTATGGCTGCTGTTAAACAGCTTCGTGCTCGTGTTAAAGAGCTGGAGGCACAATTAAATAAGGAGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
52234d50e9273dbf4be99c13c6cf6557764862c3126c8d573c5d45e0140eb82f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6487
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SRE bacteriophages Carstens,A.B., Djurhuus,A.M., Kot,W. and Hansen,L.H. 2015-08-27 — GenBank