Protein

View in Explore
Genbank accession
QQO38500.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,76
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MADNIKIEERVIDGDLVGPVTAEIDTKEFTGTVELENSLLDGSGSEINVELSESMEVVGIDDLVEVKSEIDKSVNKAEASVAESQRQIDKANETIRNLDAISGQITNLVDTAKQAATTADNRAHDAQASETNAASSASEALNSQNAAKSSENAAKASQAAAKDSENKAKLSQNASTQKAAEATAQADRAEQEADASLNSANRSEQERVKAEEAKKAAETARNQAASSAGDASQSAGNAYRSQQQALASQNAAKSSEDKAKVSATAAASSAASMTQSVADAQAARDVALQAQSDAEDARDVASGKATLATQKANAASSSAAAALVSQNAAKSSEDNAADSESKAKTSETNAKASENAAKASQAAAKASQQAASSSQQAALTSSNEAKAFRDAAKVSENKAKTSETNAKTSETNSGNSAQQAERSNQASAASATASAASATASSNSATAAKASQDAAKSSETKAKASENAAKSAQAAASASQKSAQNFASIAEQNKDASAASATAASKSATAAKASEDAAKASEANAADSATQAAKSSSDASANQLAAKKSQDAAKASESSATASKNAAANSASQASNQASQSAASAQAASDSAKAAAASATASKDSADASANSATEAKDAETAAKKSRDEAENFAIELRKGSVYRGTWNPNDGKYPDAPPTNSRWDVQLNNGQLEKVFDSKVWNWGDRLVYILDEKKFDIINSGTGVTSVNNETGAVTITPQNIGAARKTGEVFTGDITIRQASRDANLNVIAAINKNAEFSLTEEGGNQVHGTYIDYQGKDTNETHYGTISDGNKVPFMITHRGQNFPHFVGVPRVNVAQSSAGNSLIRKDWAQDTFLSKAGGTVSGGVEVTGNATAGTFKLRGLTTNKEILGSSGDKVNVGNSDLATVNILGDKLTHNGANVYTEKNKPTPYDIGAVAQGDGWQKYSQTYNVSKNTPATLLNREGKPLMMADKAYYIRAYTMGTGTFTGAVYYLKGSNLDGSSTGKVNLTLIAQQGSGSNHPEVFLDKDVPKLRTSHTNVYSISVIIEEVDNDCNPWLDLTTAYSPINRMPWNKLKDIPTQATRWPTFSEVTGKPSKYPTDWGSVSDKPAMATRWPTWAEIGGKPSLFSGSWGDLKGKPNVVVDGQNVLNIGEIRFNSAASTDAAGFLCTKESSKTHYDFQLSDDVNNDDWRWMFRYHKNTSGEYKPMMTLVPYASDKARLTVNGGIYESGERVYSPNNKPSLTALGALGKTETASNANNLQGRTKDQIVAEARSGLTLAGYSYSKSESDNKYLAKGGKATDSDKVDGIDSSRLLYGSNKYGVLPQTDFNNNVKSGAIEMSNTAHNNKPGRSSAWAWGWQTCHSGNQDKHKYGSQFIINQDNMAWFRVQNSAGEGVWRQFYHTGFKPTANDVGAYTKAEANNRYFSRGFLGYKNFSTVDFEPSELASGIYRENSVPGAVGMVVWFNGAGTSSGGFGVKVGYDYAPRIVSFTDTDKTRKVEHILYTNKNKPTLEDVTKHVIVTKSLKLQANIWATLLTKSNLKESGVYQVLITYTSAGKGGVAYSQGYTGQFYWHAENTNQDNVSEIPLQHMGTADGGEYIYLRTHAKPGNKGDHTVEIKSNRAYSAAVDFTVKLVKIM
Physico‐chemical
properties
protein length:1619 AA
molecular weight: 170952,69340 Da
isoelectric point:6,23378
aromaticity:0,06485
hydropathy:-0,62267

Domains

Domains [InterPro]
DC_1362
ATT
11–204
DC_1362 DC_1415 DC_0608 DC_1627 DC_0026
Coil
Unmapped
74–101
Coil Coil Coil Coil DC_1142
QQO38500.1
1 1619
Architecture
ATT
ATT
ATT
STR
STR
ATT 11-204 | ATT 271-373 | ATT 390-513 | STR 544-962 | STR 1271-1542 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPG01
[NCBI] 		2798882 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO38500.1 [NCBI]
Genbank nucleotide accession
MW398869.1 [NCBI]
CDS location
range 86634 -> 91493
strand -
CDS
ATGGCCGATAATATAAAAATAGAAGAAAGAGTAATTGACGGGGACTTAGTTGGCCCTGTCACTGCTGAAATAGATACAAAAGAATTTACAGGTACAGTTGAGCTTGAGAATAGTTTACTAGATGGTAGTGGTTCGGAAATAAACGTAGAACTTTCTGAGAGTATGGAAGTTGTAGGTATTGATGATCTAGTAGAAGTAAAAAGTGAAATTGATAAGTCTGTAAACAAAGCTGAGGCTTCAGTAGCGGAGTCTCAAAGACAAATAGATAAAGCTAACGAGACTATTAGAAATCTAGACGCTATTAGTGGTCAAATTACTAACCTAGTAGATACTGCTAAGCAAGCAGCAACTACAGCAGATAACCGTGCTCACGATGCTCAGGCTAGCGAAACAAACGCAGCTAGCTCCGCATCAGAGGCATTGAACTCTCAAAACGCAGCTAAATCTTCCGAAAACGCAGCCAAAGCATCGCAAGCAGCAGCAAAAGATAGTGAAAATAAAGCTAAACTTAGTCAAAATGCCTCTACTCAAAAAGCTGCGGAAGCAACCGCACAGGCAGATAGAGCCGAACAGGAAGCAGATGCATCTCTTAACTCTGCGAACCGCTCTGAACAAGAACGCGTAAAAGCAGAAGAAGCCAAGAAAGCAGCAGAGACAGCACGTAATCAAGCAGCTTCTAGTGCAGGCGACGCTTCTCAATCTGCTGGTAATGCCTATAGATCTCAACAACAAGCATTAGCTAGTCAGAATGCAGCTAAATCTAGTGAGGATAAAGCTAAGGTGTCTGCAACAGCAGCAGCTAGCTCAGCAGCATCTATGACTCAATCTGTAGCGGATGCTCAAGCAGCCCGTGATGTAGCATTACAAGCTCAATCAGACGCAGAAGACGCTCGTGATGTTGCAAGCGGCAAAGCTACTCTAGCAACTCAAAAAGCAAATGCCGCATCTTCAAGTGCAGCAGCAGCACTGGTCAGCCAGAACGCTGCTAAATCTAGTGAAGATAATGCAGCAGATAGCGAGTCAAAAGCTAAAACTAGTGAGACTAATGCGAAAGCCTCTGAGAATGCTGCAAAAGCTTCTCAAGCAGCAGCTAAGGCATCTCAACAAGCAGCTAGCTCATCTCAACAAGCAGCACTGACCTCATCAAACGAAGCCAAAGCATTCCGTGATGCAGCTAAGGTTAGCGAGAATAAAGCTAAAACTAGTGAAACTAACGCCAAAACTAGTGAAACTAACTCCGGTAATAGTGCTCAACAGGCAGAAAGAAGCAATCAAGCGTCAGCAGCGTCTGCAACTGCCTCAGCTGCTTCAGCTACAGCATCAAGTAACTCAGCTACAGCAGCTAAAGCATCTCAAGATGCAGCTAAGTCTAGTGAAACTAAAGCTAAGGCAAGTGAGAATGCAGCTAAGTCAGCTCAAGCAGCAGCTAGTGCATCTCAAAAATCAGCACAAAATTTTGCTTCAATAGCAGAGCAAAACAAAGACGCGTCAGCAGCTTCTGCAACAGCAGCAAGTAAGTCTGCAACAGCAGCTAAGGCTAGTGAAGATGCAGCCAAAGCTTCAGAAGCGAATGCAGCAGATAGTGCAACACAGGCAGCTAAGTCTTCAAGCGATGCGTCAGCTAACCAACTAGCTGCCAAAAAGTCCCAAGATGCAGCTAAAGCTAGTGAGAGTAGTGCTACCGCATCTAAGAATGCCGCAGCTAACTCAGCCTCTCAAGCTAGTAATCAAGCAAGTCAATCAGCAGCATCAGCACAGGCAGCAAGCGATTCTGCTAAAGCGGCAGCAGCCTCAGCTACAGCTTCTAAAGATAGTGCAGATGCCAGTGCAAACTCAGCTACAGAAGCTAAAGACGCAGAGACAGCAGCTAAGAAGTCCCGTGATGAAGCTGAAAACTTTGCTATAGAACTACGTAAAGGTAGTGTATACCGTGGTACTTGGAACCCAAATGACGGTAAGTATCCGGATGCCCCACCAACTAACTCCCGCTGGGACGTTCAATTAAATAATGGACAATTAGAAAAAGTATTCGATAGTAAAGTATGGAACTGGGGCGACCGTCTAGTATACATCCTAGATGAGAAAAAATTCGATATTATTAACTCTGGTACTGGTGTTACTTCTGTAAACAACGAGACTGGAGCAGTTACTATTACACCTCAGAATATTGGCGCCGCTAGAAAAACCGGTGAAGTATTTACTGGTGATATTACTATAAGACAGGCTTCTAGAGACGCTAATTTAAATGTAATTGCTGCTATAAATAAAAATGCAGAATTTTCACTAACAGAAGAGGGCGGCAATCAAGTACACGGTACGTACATAGATTATCAAGGCAAAGATACTAATGAAACCCACTACGGTACGATAAGTGATGGTAATAAAGTACCTTTCATGATTACTCATAGAGGACAGAATTTTCCTCACTTTGTCGGTGTACCAAGAGTAAACGTAGCGCAGTCTAGTGCCGGTAATTCTTTAATACGTAAGGACTGGGCACAAGATACCTTCCTGAGTAAAGCAGGGGGAACGGTTTCAGGAGGAGTAGAAGTAACAGGTAACGCTACGGCGGGTACTTTTAAGTTAAGAGGACTAACTACAAATAAAGAGATACTGGGAAGCTCAGGAGATAAAGTTAATGTAGGTAACAGTGATTTAGCTACAGTAAATATTTTAGGTGATAAGTTAACACATAACGGGGCCAATGTATACACTGAGAAAAACAAGCCTACCCCTTACGATATTGGGGCGGTTGCACAAGGGGATGGTTGGCAGAAATATTCCCAAACTTATAATGTTAGTAAAAATACCCCTGCTACTCTTTTAAACAGAGAAGGCAAACCCTTGATGATGGCCGACAAGGCTTACTATATCCGAGCATACACTATGGGTACTGGTACATTTACAGGGGCAGTATACTACCTAAAAGGTAGTAATCTAGATGGTAGCAGTACAGGCAAGGTTAATTTAACATTAATAGCACAACAAGGCTCTGGTAGTAACCATCCGGAGGTCTTTTTAGATAAGGATGTACCTAAGCTCCGTACAAGCCATACTAATGTATATAGCATATCTGTTATTATAGAAGAAGTAGACAATGACTGCAACCCTTGGCTAGATTTAACTACTGCCTATAGCCCTATTAATAGAATGCCATGGAATAAACTAAAGGATATCCCTACCCAAGCAACAAGGTGGCCTACCTTCAGTGAGGTTACTGGCAAACCTAGTAAGTATCCTACTGATTGGGGGAGTGTATCTGATAAGCCAGCAATGGCTACGCGATGGCCTACGTGGGCTGAAATAGGGGGTAAACCCTCTCTATTCTCAGGTAGCTGGGGCGACCTAAAAGGTAAGCCTAATGTAGTAGTAGATGGACAAAACGTCCTGAACATCGGTGAGATACGCTTTAATAGTGCTGCCAGTACTGATGCAGCAGGTTTCTTATGTACTAAAGAGAGTAGTAAAACTCACTATGACTTCCAGTTGTCAGATGATGTTAATAATGATGATTGGAGATGGATGTTCCGTTACCACAAGAATACATCGGGAGAGTACAAACCTATGATGACGTTAGTCCCTTATGCATCTGATAAGGCACGACTAACTGTCAACGGAGGTATATATGAGTCTGGGGAGAGGGTTTACTCACCTAATAATAAACCTAGCTTAACAGCTCTGGGTGCGTTAGGTAAGACCGAAACTGCTAGTAACGCTAACAACCTACAAGGTAGAACCAAAGATCAAATCGTTGCAGAGGCTCGTAGTGGTTTAACACTAGCCGGATACAGTTATTCTAAATCAGAATCAGATAATAAGTATCTAGCTAAGGGGGGTAAAGCTACTGATTCTGATAAAGTAGATGGTATTGATTCTTCTAGACTTCTTTACGGTAGTAATAAGTATGGTGTACTACCACAAACTGACTTTAATAATAATGTTAAGTCAGGTGCTATTGAAATGTCTAATACTGCACATAATAATAAGCCAGGACGTAGTAGTGCTTGGGCTTGGGGATGGCAAACCTGTCACTCGGGTAACCAAGATAAACACAAGTACGGCTCACAGTTTATTATAAACCAAGATAATATGGCTTGGTTTAGAGTACAAAATTCAGCAGGTGAAGGTGTTTGGAGACAATTCTACCATACTGGGTTCAAACCGACAGCTAATGATGTAGGTGCATATACAAAAGCGGAAGCTAATAATAGATATTTCTCTAGGGGGTTCCTAGGCTATAAGAACTTCTCTACTGTAGACTTTGAGCCCTCTGAATTAGCATCTGGTATTTATCGTGAAAATTCTGTACCTGGGGCTGTAGGTATGGTTGTATGGTTTAACGGTGCTGGTACCTCCTCGGGAGGCTTCGGCGTTAAAGTTGGTTATGACTACGCTCCACGAATTGTTTCCTTTACGGATACTGATAAGACTAGAAAAGTAGAACACATATTATATACTAACAAGAATAAACCTACACTAGAAGATGTTACTAAACATGTTATAGTTACTAAGAGTTTAAAACTTCAAGCCAATATTTGGGCTACTCTATTAACTAAATCAAACCTTAAAGAATCTGGCGTATATCAAGTACTAATTACTTATACGTCAGCAGGTAAAGGCGGTGTTGCCTACTCTCAAGGCTATACTGGTCAGTTCTACTGGCACGCAGAGAACACAAACCAAGACAACGTCTCTGAAATCCCGTTACAGCATATGGGTACAGCAGACGGTGGCGAGTATATCTACCTAAGAACCCATGCTAAGCCTGGTAACAAAGGCGACCATACTGTAGAAATTAAATCTAACCGAGCGTACTCTGCTGCGGTAGACTTTACTGTTAAGCTCGTGAAAATAATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a4461238ee04a45757c0fa0ba80cda0bc8a00fc7059dfe78380b2a9ce579598f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6150
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VPG01 Kim,B.S. and Kim,M. 2012-06-15 — GenBank