Protein

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Genbank accession
XOB87460.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MATSLFDNYKQKLTELQKEKQNAVAVITNNKDLVVYEELNSKFNLQNDKIGLEVSKLWQGVNNVEENTISKIEILDDKITLESERKVEGNPIVNGAFESENIFGWNVGGTNISITTNYTYLGKRNINYINVTPTSTSGNSSWSNRFSILPSTEYTLSGLFFTGTSTKLGIKVKFSNSIKEGNDFEKEGTFDEEINLGNWSSESDLFVPKHFTFITPPNAKSAFLEFYYYEATNYCGWTEIMLTKGKEPSSYISKTASYSKVFQQLTPDSIINSVNKGLTEGGAISVASTILDENGFSQLNRGKLSVRLNNNGTHVYSFLQDDKINGSLQALRNVVTGDDVVGLTNEKGAYAQIAYRGDGSNYYNYMRFDKEGLTQPTPITVYEEFNMNGLNMYFDKKNQESRMFGYLDSRNRGSVALYTNNFGFWSNDGSGNHLLTLDRDVANFYNKVIIGGDLSVIGNKNCIQQTKFGDVPFYANEDINSLLTETDTDNIYTTELIEGKYICRIEIDEIIQECINTMLPYNIYIDKLSWGDYKIEIREKDYFIVESDREMKFKYKLEGKRKGFEHENKENNFMQKATVQKPSQETETPSIQKREKEIIHKKPINEFWELYRCNNCN
Physico‐chemical
properties
protein length:617 AA
molecular weight: 70435,81470 Da
isoelectric point:5,11980
aromaticity:0,11669
hydropathy:-0,59773

Domains

Domains [InterPro]
DC_1054
STR
1–617
DC_1054
Coil
Unmapped
6–26
Coil G3DSA:2.60.120.260
XOB87460.1
1 617
Architecture
STR
STR 1-617
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOB87460.1
1 617
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,6908
Central domain 134 344 212 0,5488
C-terminal 345 617 272 0,7451
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-344
C-terminal
345-617

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage HMD-PC1
[NCBI] 		3397798 No lineage information
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOB87460.1 [NCBI]
Genbank nucleotide accession
PQ821647 [NCBI]
CDS location
range 37372 -> 39225
strand +
CDS
ATGGCGACAAGTTTATTTGATAATTACAAACAAAAACTAACCGAGCTACAAAAAGAAAAACAAAATGCGGTTGCGGTTATAACTAATAATAAAGATTTGGTTGTCTATGAAGAATTGAATTCTAAATTCAATCTTCAAAACGACAAAATCGGTTTAGAAGTTTCTAAACTATGGCAAGGTGTTAACAATGTAGAGGAAAATACGATTTCAAAAATAGAAATATTAGATGATAAAATAACTTTGGAATCGGAAAGAAAAGTGGAAGGGAATCCAATAGTAAACGGTGCTTTTGAAAGCGAAAATATATTTGGTTGGAATGTTGGAGGGACAAATATATCGATAACAACTAATTATACTTATTTAGGTAAAAGAAATATAAATTATATAAATGTTACACCGACATCAACTAGCGGTAATTCTAGTTGGAGTAATAGATTCTCTATTTTACCATCAACCGAGTATACTTTATCAGGATTATTCTTTACAGGAACATCTACAAAATTAGGGATAAAAGTTAAATTCTCTAACTCTATAAAAGAAGGTAATGACTTTGAAAAAGAAGGAACTTTTGACGAAGAAATAAACTTAGGGAATTGGAGTTCAGAAAGCGATTTATTTGTGCCTAAACATTTCACATTTATTACGCCACCTAATGCTAAAAGTGCATTTTTAGAATTTTATTACTATGAAGCTACAAATTATTGTGGTTGGACTGAAATAATGCTAACTAAAGGTAAAGAGCCTTCTAGTTATATTAGTAAAACCGCTTCATATTCTAAAGTTTTTCAACAATTAACACCCGATTCAATTATAAATAGTGTAAACAAAGGTCTTACAGAAGGTGGAGCTATAAGTGTTGCGAGTACAATTTTAGATGAAAACGGATTTTCTCAACTTAACAGAGGTAAATTGTCAGTAAGATTAAACAATAACGGAACTCATGTTTATAGTTTTTTACAAGATGATAAAATAAATGGTTCTTTACAAGCGTTGAGAAATGTTGTTACTGGTGATGATGTCGTTGGATTGACAAACGAAAAAGGGGCATATGCGCAAATTGCTTATAGAGGTGACGGTTCTAATTATTACAATTATATGCGTTTTGATAAAGAAGGACTTACACAACCGACACCTATAACGGTTTATGAAGAATTTAACATGAATGGATTAAATATGTATTTCGATAAAAAGAATCAAGAAAGTAGAATGTTTGGTTATTTAGATAGTAGGAACAGAGGTTCAGTAGCTTTATATACCAATAATTTTGGATTTTGGTCGAACGATGGTAGTGGTAATCATTTACTTACATTAGATAGGGATGTGGCTAATTTTTATAACAAAGTTATAATAGGCGGTGATTTATCTGTTATAGGAAATAAAAACTGTATTCAACAAACTAAGTTTGGAGATGTTCCATTCTATGCAAATGAGGATATAAACTCTTTATTAACTGAAACAGACACAGATAATATTTATACAACAGAATTAATTGAAGGGAAATATATTTGCAGAATTGAAATAGATGAAATAATTCAAGAGTGTATCAACACAATGTTACCTTATAACATTTATATAGATAAATTAAGTTGGGGAGATTATAAAATTGAAATTAGAGAGAAAGATTATTTTATAGTTGAATCTGATAGAGAAATGAAATTTAAATATAAATTAGAAGGAAAAAGAAAAGGGTTTGAACATGAAAATAAAGAAAATAATTTTATGCAAAAAGCTACAGTCCAAAAACCTTCTCAAGAAACTGAAACACCATCGATACAAAAAAGAGAGAAAGAAATTATCCATAAAAAGCCGATTAATGAATTCTGGGAGTTATATCGTTGCAATAATTGTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
022af9f0b6faccc57708467c3bdad2f8736a513f2669bae982c9b30df233712f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6101
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50