Protein

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Genbank accession
XPK43043.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGQAGAINLTGKYLQKTDAAATYQTKTEGASKDFVLDSIQPIMSGALFREDPWVVNDTPFRSTGANGVESVDMMKVTTDNSIKIGSYASSVQGVEIHSAGRLQVVDQNDSGVETKYPVYSKRYRPEIEDLPFAAIGSYVKDSKGRTVGVTRTGINSDIKQLTQKVTFTQPVTVPDAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVFSDGQLLNRADYPDLWAYAQLLSPIEDSLWLEDPYQRGRYSKGDGTTTFRVPDRNGIQPNSLQALYGRGDGGASAANGQVFDSAAPDIVGAVAAYSAGTYAQLFGVATNAFSSSNAFFPDGTGDTIPPGSGPVDGRYNTVEFKASKYNGIYGRSNTEIMGRNFVGVWTIRANGGFVAANTSWSVINSDSAAPALNTSVVGGKVESKYTNPTSSQYARIYVSSSWGSVCSAVIEAQGASVHAYKFYEDGTVDFRQSGKTNPFRMYTPTGTWTGLTDAGPNNLTTNGMDRVAISSGSDTVVRGYSIGGSKPNGYPTKVGYHMYLPGSAAFGVACTTIGGDNGKFCRYFYDIDGQMYGSTDYGNFSYTKSGVSDENLKHNIVDIDAERAIEVIKGLKFKSFVYNDDEKNRSRRGIIAQQAETVEPLYVKTRKYPGMEKGSPEIEQKELDTTPMLLDTMQVVQDLLKRIEVLESKLAEK
Physico‐chemical
properties
protein length:730 AA
molecular weight: 78715,74850 Da
isoelectric point:5,55126
aromaticity:0,09726
hydropathy:-0,36630

Domains

Domains [InterPro]
DC_1514
STR
20–334
DC_1514 DC_1985
IPR030392
CHP
625–727
IPR030392
IPR030392
CHP
625–677
IPR030392
XPK43043.1
1 730
Architecture
STR
RBD
STR 20-334 | RBD 445-730
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK43043.1
1 730
Domain Start End Length (AA) Confidence
N-terminal 1 125 125 0,5697
Central domain 126 324 200 0,2095
C-terminal 325 730 405 0,9052
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-125
Central
126-324
C-terminal
325-730

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage SkaterBoy_Bas90
[NCBI] 		3398433 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK43043.1 [NCBI]
Genbank nucleotide accession
PQ850626.1 [NCBI]
CDS location
range 10256 -> 12448
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGTATAATGATGCCTCATGTGGTTGTAACCAGAGACGCGGCTGTTGTTGGGGTTTCTACTGTAGATGGACAGGCTGGAGCTATTAACCTCACCGGAAAATATTTACAGAAAACCGACGCAGCTGCTACCTATCAAACTAAAACAGAGGGTGCATCTAAAGATTTTGTGCTGGATTCGATTCAACCTATTATGTCTGGTGCGCTGTTCCGAGAAGACCCTTGGGTTGTTAATGATACCCCATTCCGTTCTACTGGAGCTAATGGTGTAGAATCAGTTGATATGATGAAAGTTACTACTGATAACTCAATCAAGATTGGTAGTTATGCCTCTTCAGTTCAAGGTGTAGAGATTCATTCTGCTGGTCGTCTTCAGGTTGTTGACCAGAATGACTCTGGGGTAGAAACTAAGTATCCAGTTTATTCTAAACGTTACCGTCCTGAGATTGAGGATTTGCCTTTTGCTGCAATTGGTTCTTATGTTAAAGACTCTAAAGGTCGTACGGTAGGTGTTACTCGTACAGGGATTAACTCTGATATCAAACAGCTCACACAGAAAGTTACTTTCACTCAACCAGTAACTGTCCCTGATGCAGTTGGTGATTATGATGCAGTCACTTTGAGACAGCTTCGAAACAGTGGTGGTGGCTCTGGTGGTCCTACGATGAGCGGTATCTCTAACTTTGGTATCGGTGATTTTCACTTACGGGATAGTCGAGCTTTCATCCCAGCTTTTGAAGTGTTTTCTGATGGTCAGCTTCTAAATCGTGCAGACTATCCAGACCTGTGGGCTTATGCACAGCTGTTATCTCCTATTGAAGACTCTTTGTGGCTAGAAGACCCTTATCAAAGAGGTAGATACTCTAAGGGTGATGGCACAACTACTTTCCGTGTTCCAGACCGAAATGGTATTCAGCCTAACTCCCTTCAGGCTCTTTATGGACGAGGTGATGGTGGTGCTTCCGCAGCTAATGGTCAAGTATTTGATTCTGCGGCCCCAGACATTGTCGGCGCTGTTGCAGCATACTCTGCTGGAACTTATGCCCAGCTTTTTGGAGTAGCTACCAATGCATTTTCATCTAGTAATGCCTTCTTTCCTGACGGTACAGGGGATACAATACCTCCGGGGTCTGGGCCAGTCGATGGTCGATATAACACTGTTGAGTTTAAGGCTTCCAAATATAATGGAATTTATGGTCGCAGTAACACAGAGATTATGGGTCGTAACTTTGTTGGTGTGTGGACTATTCGCGCTAATGGTGGGTTTGTCGCTGCTAACACTTCTTGGAGTGTCATTAATAGCGATAGCGCAGCTCCGGCTCTAAATACTTCTGTGGTTGGTGGTAAGGTAGAATCTAAATATACTAACCCAACCTCTTCCCAATATGCTCGTATTTATGTTTCCTCTTCTTGGGGAAGTGTTTGCTCTGCCGTGATTGAAGCACAAGGTGCAAGTGTTCACGCTTATAAGTTTTATGAGGATGGCACTGTTGATTTTAGGCAGTCTGGTAAGACAAACCCATTCCGCATGTACACACCAACTGGAACTTGGACTGGACTGACGGATGCGGGGCCAAACAATTTAACCACCAATGGAATGGATAGGGTGGCGATTTCTAGTGGCTCTGACACAGTGGTGCGTGGGTACTCTATTGGAGGATCTAAACCTAATGGTTATCCAACCAAGGTTGGGTATCATATGTATTTGCCGGGAAGTGCCGCCTTCGGTGTCGCCTGTACAACTATTGGAGGAGACAACGGAAAGTTCTGTCGATATTTTTACGACATAGACGGGCAGATGTATGGCTCAACTGATTATGGAAACTTTAGCTATACAAAGAGTGGTGTCTCGGATGAAAACCTGAAACATAACATTGTTGATATTGATGCAGAAAGAGCTATTGAAGTAATAAAAGGACTGAAGTTCAAATCCTTTGTTTACAACGATGATGAGAAGAATCGATCTCGTCGTGGTATCATTGCACAGCAGGCAGAGACGGTAGAACCTCTGTATGTCAAGACTCGCAAATACCCAGGAATGGAGAAAGGCTCTCCAGAAATTGAGCAGAAAGAGCTAGACACTACTCCAATGCTCCTTGACACTATGCAAGTAGTTCAAGACCTTCTGAAGCGTATTGAAGTTCTGGAATCGAAGTTAGCAGAGAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8dc5e17ec28852f93d92d000a1d62ec973c8f18500803ef7ac3718d5bfc10498
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5955
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank