Protein

View in Explore
Genbank accession
DBA08353.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSVVTKKRHQPLRGSKGGSSKPKQPHIAQNGVASLSTARIVYLLSWGPIVGPVNGLKSIKLDGTPIQAEDGTLNYPDVKWQFRPGELNQERLEGVAESSNEIAVGQTLLSTQPYIYTVTNATADAVRVRLSWPNLQAQDSSGNINGVRIEYAIDVATDGAPYQTVLSTFVDRKNVTTYYRSHRINLPAGGHWAVRVRRITPEANSSLVQDTMVLTAIAEVVDSNQEFPLTALGCVEYDAQQFGGDFPKFSALMRGRIVRVPMNYDPETRTYFTGGPGTTNGVWDGTFKEAYSNNPAWVFYDLVLNPYYGLGERIDQSMVNRWALYRIAQYCDQLVPDGKGGQEPRFTCNLYLQKQEEAYAVLQDLAAIFHGLAFWDGSQITVNADMPQDPVYTYTTSQILNDGVVAYSGTRTRDRHSLAMVSWDNPANAFETDKEPVFDEDAIVELGGIVREVSVGALGCTSQGQAQRAGQWALMTEQLQTRGAVWKVGLDGFIPRPGQVVALADPMLAGRANGGRISAVSGRAITVDRDVDIPLGARLRVNLPSGRSEARAIQGLDGRVITVVADFSEEPSPESGWAIDYDDLALMQFYVKNVTRPSWEQFQLEVIQHEPGKFDAIDHGAIIDSRPISVLPSGVQDPPARVLISQHIAFEQGLAVTIMTIAWDAAPGAVAYDVEWRWGSREWVKVPRTGELMVEVRGVYTGQYLARVRAVNSMNVSSIPANSVLTNITGKTGAPPALAFLRTTSGPWKIGLEWGFPASGAADTAYTEIQQSVTPGGSEQNATALGLFAYPTDTHTLTSLAAGARLAFRGRLIDRTGNVGPWSAWVDGISSTDASEYNELITKEYVESALGEQFFAEIDQMQVDISGLQDQIDNLTDVLAYDPTKTYAKNDIVRVGNRLYQAKQTVPLNASPPNATYWADIGQSIETANGLAQQVATNTADITELDGKVEAAASSLDVLQAAARREPATGEKADALKGWDTIARAATEVTVRANEDEAQAKRTSLLEARTATAEGRITTVEQVTASDRQATAQRIDQLSAEVGSNSAAIQTTSQAVASLDGNVQALYSVKLQAHTNGQQYATGFQLGFDSGTSVTTMAFQADRFLWFNSSSGQAVAPVSIIGGQMFINNAMIQDGSITNAKIGNVIQSTALGANGEPLWKLDKAGSLTMNSATSGGFMRQTAEAVKVYDANLVLRVQIGNLDA
Physico‐chemical
properties
protein length:1203 AA
molecular weight: 130119,06480 Da
isoelectric point:4,97548
aromaticity:0,07980
hydropathy:-0,22843

Domains

Domains [InterPro]
DC_0014
STR
1–1203
DC_0014
IPR053171
Unmapped
6–1179
IPR053171
IPR055385
ATT
99–222
IPR055385 IPR032876 IPR036116 Coil IPR015406
DBA08353.1
1 1203
Architecture
STR
ATT
STR
ATT
STR
STR 1-98 | ATT 99-222 | STR 223-353 | ATT 354-521 | STR 522-1203
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
DBA08353.1
1 1203
Domain Start End Length (AA) Confidence
N-terminal 1 520 520 0,9349
Central domain 521 1071 552 0,0369
C-terminal 1072 1203 131 0,3815
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-520
Central
521-1071
C-terminal
1072-1203

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeS-D14C
[NCBI] 		2965060 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa strain 1-13
[NCBI] 		1175452 Bacillota > Tissierellia > Tissierellales > Peptoniphilaceae > Peptoniphilus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA08353.1 [NCBI]
Genbank nucleotide accession
BK061477.1 [NCBI]
CDS location
range 34984 -> 38595
strand +
CDS
ATGTCTGTTGTGACCAAAAAGCGCCATCAGCCTTTGCGTGGAAGCAAGGGGGGCAGTTCCAAGCCGAAGCAGCCGCACATTGCCCAGAACGGCGTTGCCTCCCTGTCCACTGCTCGGATCGTGTATCTCCTGAGCTGGGGGCCGATTGTTGGGCCAGTCAATGGACTCAAGTCGATCAAGCTTGACGGTACTCCGATCCAGGCAGAAGACGGCACGCTGAACTACCCCGACGTGAAGTGGCAGTTTCGTCCAGGTGAGTTAAATCAGGAGCGACTAGAGGGCGTAGCGGAATCCAGCAATGAGATTGCGGTGGGTCAGACCTTGCTCAGCACGCAGCCCTACATCTACACCGTCACGAACGCTACGGCGGATGCGGTACGCGTGCGCCTGTCCTGGCCCAACCTGCAGGCGCAGGACTCGTCCGGGAACATCAATGGGGTGCGCATTGAGTACGCGATCGATGTCGCCACGGATGGTGCTCCTTACCAGACTGTACTCAGCACGTTTGTCGACCGGAAGAACGTTACGACCTACTACCGATCCCACCGGATCAACCTGCCGGCAGGAGGGCACTGGGCGGTACGCGTGCGGAGGATCACGCCGGAGGCGAACAGCTCTCTGGTCCAGGACACCATGGTGCTGACTGCGATAGCTGAAGTTGTCGACAGCAACCAGGAGTTTCCGCTCACCGCCCTTGGCTGCGTGGAATATGACGCCCAGCAGTTCGGGGGTGACTTTCCGAAGTTCTCTGCGCTCATGCGCGGGCGAATCGTGCGGGTCCCGATGAACTATGACCCTGAGACTCGGACCTATTTTACCGGCGGCCCCGGTACCACGAATGGCGTTTGGGACGGCACCTTCAAGGAGGCTTATTCCAACAATCCGGCCTGGGTCTTCTATGACCTGGTGTTGAACCCCTATTACGGCCTGGGCGAGCGCATCGACCAGAGCATGGTCAACCGTTGGGCCCTCTATCGCATTGCGCAGTATTGCGACCAGTTGGTGCCGGACGGGAAGGGCGGTCAAGAGCCTCGGTTCACTTGCAACCTCTATCTTCAGAAGCAAGAGGAGGCGTATGCCGTTCTTCAGGATCTCGCTGCAATCTTTCATGGGTTGGCGTTCTGGGATGGTAGCCAGATCACTGTCAACGCCGACATGCCGCAGGACCCCGTTTACACCTACACCACTTCGCAGATTCTGAACGATGGCGTGGTTGCGTACTCGGGAACGCGGACGCGAGACCGCCATTCGCTGGCGATGGTCTCTTGGGACAATCCTGCCAATGCGTTCGAGACAGACAAGGAGCCGGTCTTCGACGAGGATGCGATTGTCGAGCTTGGCGGTATCGTCAGGGAGGTATCGGTCGGGGCTCTTGGCTGCACCAGTCAGGGCCAGGCTCAGCGGGCGGGGCAGTGGGCGCTTATGACTGAGCAATTGCAGACTCGTGGTGCCGTCTGGAAGGTTGGCCTGGATGGATTCATCCCTCGCCCTGGGCAGGTGGTGGCTCTGGCAGACCCCATGCTTGCCGGTCGTGCGAACGGCGGCAGGATCTCGGCGGTGTCTGGACGAGCAATCACCGTTGATCGAGATGTGGATATCCCGCTCGGCGCGCGACTGCGGGTCAACTTGCCCAGCGGGCGCTCGGAAGCCAGAGCGATTCAAGGCCTGGATGGGCGCGTCATAACAGTGGTGGCCGACTTCAGCGAAGAGCCTTCCCCTGAGAGCGGGTGGGCGATCGACTACGACGACCTGGCCCTGATGCAGTTCTATGTCAAGAATGTGACCAGGCCAAGCTGGGAGCAATTTCAGCTTGAGGTCATCCAGCACGAGCCCGGCAAGTTTGATGCGATTGATCACGGGGCGATCATCGACTCTCGACCGATCAGCGTCCTCCCATCCGGCGTGCAAGATCCGCCTGCGCGCGTATTGATCTCGCAGCACATCGCGTTCGAGCAAGGCCTGGCGGTCACGATCATGACCATCGCCTGGGACGCGGCACCGGGCGCGGTAGCGTACGACGTAGAGTGGCGCTGGGGCTCTCGAGAGTGGGTCAAGGTTCCGCGTACGGGTGAACTGATGGTCGAGGTCCGCGGGGTATACACCGGCCAATACCTTGCGCGTGTGCGCGCCGTTAACTCCATGAACGTGTCGTCGATCCCGGCGAACTCGGTGTTGACCAACATCACCGGTAAGACCGGCGCGCCGCCGGCGCTGGCGTTCCTGCGTACCACCAGCGGACCGTGGAAGATCGGCCTGGAGTGGGGATTCCCGGCCAGTGGCGCGGCGGACACCGCCTACACCGAGATCCAACAGTCGGTTACCCCAGGCGGCAGCGAACAGAACGCAACTGCCCTGGGCTTGTTTGCATACCCGACCGATACCCACACGCTGACCTCGCTGGCGGCCGGCGCTCGCCTGGCCTTCCGCGGGCGGCTGATCGACAGGACCGGCAACGTCGGCCCCTGGTCGGCCTGGGTCGACGGCATAAGCTCGACGGATGCGAGCGAGTACAACGAGCTGATCACCAAGGAGTACGTCGAGTCCGCGCTGGGCGAGCAGTTCTTCGCCGAAATCGATCAGATGCAGGTCGATATCAGTGGCCTGCAGGACCAGATCGACAATCTGACCGATGTGCTGGCCTACGACCCGACGAAGACCTACGCGAAGAACGATATCGTGCGGGTCGGCAACCGGCTGTATCAAGCGAAGCAGACGGTGCCGCTCAACGCCTCGCCGCCGAACGCGACCTACTGGGCCGACATCGGACAGTCGATCGAGACGGCCAACGGCCTGGCCCAGCAGGTGGCCACCAACACCGCGGATATCACCGAGCTCGACGGTAAGGTCGAAGCGGCGGCTTCGAGCCTGGATGTTCTGCAGGCTGCCGCCCGCCGGGAGCCGGCGACCGGAGAGAAGGCCGATGCGCTGAAGGGCTGGGACACCATTGCTCGAGCCGCCACCGAAGTCACCGTGCGGGCGAACGAGGACGAAGCGCAGGCGAAGCGGACGAGCTTGCTTGAAGCGCGGACTGCAACTGCGGAGGGGCGCATTACCACGGTCGAGCAGGTGACCGCGAGCGACAGACAAGCCACTGCCCAGCGCATCGACCAACTTTCAGCGGAGGTGGGTAGCAACAGTGCGGCAATCCAGACGACGTCCCAGGCAGTGGCCTCTCTGGATGGGAACGTTCAGGCGCTCTACAGCGTGAAGCTCCAGGCCCATACCAATGGGCAGCAGTACGCCACCGGGTTCCAGCTTGGGTTCGACAGCGGTACGAGCGTGACGACCATGGCGTTCCAGGCTGATCGGTTCCTCTGGTTCAACAGTTCCAGCGGGCAGGCCGTGGCGCCGGTCTCGATCATCGGCGGCCAGATGTTCATCAACAACGCGATGATCCAGGACGGTTCGATCACCAACGCGAAGATCGGCAACGTGATTCAGTCGACCGCACTCGGTGCCAACGGCGAGCCGCTGTGGAAGCTTGATAAAGCAGGGAGTTTGACGATGAACAGCGCAACGTCCGGAGGCTTCATGAGGCAGACAGCGGAGGCCGTTAAAGTCTACGACGCGAACCTGGTGTTACGGGTACAGATCGGGAATCTCGACGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f92ee3746c0df444077ec9ceac8b4e868e812609ab6a989a6659bf174d5f082e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7716
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M. 2023 — GenBank