Protein

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Genbank accession
URG13495.1 [GenBank]
Protein name
putative baseplate upper protein
RBP type
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MDIDIKKNGKVRVLDTPYFKPITQTNISFSNMDIGTAKITFELLKNSLPLQVSEKNVDVYSYLESKNGSSIEVPLHFEDPLNGIVSMTIDKDFLEASTNSTVEGQLYITMNKKNKTYNDYSNTVALQKFSFAVEDALINKISGSDKIFYIRSFDILKSEIKNKIYEMEQDIGKIEEVKKELETLFYEIKEEITQIRKDTINQLQSEYKEYSDLLNDIHNQALTDIDNRTKVSLNQIDNKKEEVLQLLEEGEIITKSMFEEYKSDIQDQLDEALLKNQNEIKSYKDDLQNTIDNLNWQKHKLTTDEGNIISVTDTVDMNTLSGLDKTGFYYCSNITNSPDSESTTGYINVYNQSSTLGFAYFINQDGQTIYTNTKNNGSWGDWQPISKDQIEDLEWQKYKLTEDNGNRVSLGTLDKPVEKLSAGYYECTIPSNSEVVNAPSNNSGSSYLAEIDVTVGNSGRKQILLIQSYTKNIWFKTIHTNGADRGWVLVNRDYEKDLDWQKYKMVDDNGKNYTVDCKNNGTTLHNLAPKHYYLTNVPDLPSGVGKDGMALVISDNTDKNGRIIYSPQSSSGVYMKNKVMGNWSPFVKVTTNYSSTGWQDLPLTNGIQEYSSSYTPQFKLVEMNDMIMFSLRGAIKNVTSSRQMFAQIPPYILRKLVPPHPYVQSGSVKNGEATFVRLSIERNGEVGIIAFSKPNEMNASDFYPIDTTIVI
Physico‐chemical
properties
protein length:711 AA
molecular weight: 80798,58510 Da
isoelectric point:4,95178
aromaticity:0,09564
hydropathy:-0,57918

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
17–140
G3DSA:2.60.40.3350 Coil Coil Coil cd19958 DC_0244
IPR018913
ATT
21–161
IPR018913 DC_0196
DC_1216
STR
65–394
DC_1216
URG13495.1
1 711
Architecture
ATT
STR
ATT 17-161 | STR 162-711
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URG13495.1
1 711
Domain Start End Length (AA) Confidence
N-terminal 1 372 372 0,9699
Central domain 373 575 204 0,0284
C-terminal 576 711 135 0,9579
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-372
Central
373-575
C-terminal
576-711

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage CUB-EPI_14
[NCBI] 		2945941 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URG13495.1 [NCBI]
Genbank nucleotide accession
ON325435 [NCBI]
CDS location
range 22099 -> 24234
strand +
CDS
ATGGATATAGATATTAAAAAGAATGGCAAAGTACGTGTGTTAGATACACCGTACTTTAAGCCAATCACACAAACAAATATTTCTTTTTCTAACATGGATATTGGAACTGCGAAAATAACTTTTGAATTGTTAAAAAACAGTTTGCCTTTACAAGTTAGCGAGAAGAATGTTGACGTTTATAGTTATTTAGAAAGTAAAAATGGTAGCAGCATAGAAGTACCATTACACTTTGAAGATCCTTTGAATGGTATCGTTAGTATGACAATAGACAAAGATTTCTTAGAAGCGTCTACAAATTCAACTGTAGAAGGCCAACTATACATAACGATGAATAAGAAAAACAAAACATACAACGATTACTCAAATACTGTAGCATTACAAAAATTTAGTTTTGCAGTTGAGGACGCTTTAATAAATAAAATTAGTGGTAGCGATAAAATATTCTATATTAGATCTTTCGACATTTTAAAATCAGAAATCAAAAATAAAATTTATGAAATGGAACAAGACATCGGCAAGATCGAAGAAGTGAAAAAAGAACTTGAAACACTATTTTATGAGATTAAAGAAGAAATCACTCAAATTAGAAAAGATACTATTAATCAATTGCAAAGTGAATATAAAGAGTATAGCGATTTATTAAATGATATACATAATCAAGCATTAACCGATATTGATAATCGTACAAAAGTTTCACTTAATCAAATTGACAATAAAAAAGAAGAAGTCCTTCAATTATTAGAAGAAGGCGAAATTATTACAAAATCAATGTTTGAAGAATACAAGTCAGACATTCAAGATCAACTAGACGAAGCATTATTGAAAAATCAAAATGAAATCAAATCATATAAAGATGATCTTCAAAATACAATCGACAATTTAAATTGGCAAAAGCATAAATTAACAACTGACGAAGGCAACATCATTTCTGTTACTGACACTGTAGATATGAATACATTAAGCGGTTTAGATAAAACAGGATTTTATTACTGCTCAAACATCACAAATTCGCCTGACAGTGAAAGTACAACAGGTTATATAAACGTTTATAATCAAAGCTCTACTTTAGGATTTGCTTATTTCATAAATCAAGACGGTCAAACTATATATACCAACACTAAAAACAATGGTTCGTGGGGCGATTGGCAACCTATAAGCAAAGATCAAATTGAAGATCTAGAATGGCAAAAATACAAATTAACCGAAGATAACGGGAATCGTGTTTCTTTAGGAACATTAGATAAGCCTGTAGAAAAACTTTCGGCTGGATATTACGAGTGTACTATACCGTCTAATTCAGAAGTGGTAAACGCGCCCTCCAACAATAGCGGAAGCTCATATTTAGCTGAAATAGACGTCACAGTTGGGAATAGTGGTAGGAAACAAATACTTTTAATCCAAAGTTATACAAAAAATATATGGTTTAAGACTATACATACTAATGGTGCTGATAGAGGTTGGGTTTTAGTAAATAGGGATTACGAAAAAGATTTGGATTGGCAAAAATATAAAATGGTTGATGACAACGGAAAAAACTATACGGTAGATTGCAAAAATAATGGAACGACATTACATAATTTAGCTCCTAAACATTATTACCTTACTAATGTACCTGATCTACCAAGCGGAGTAGGGAAAGACGGTATGGCTTTAGTTATATCCGATAATACAGATAAAAATGGACGTATCATTTATTCTCCGCAATCCTCATCAGGTGTTTATATGAAGAACAAAGTTATGGGTAATTGGTCGCCATTCGTTAAGGTTACAACTAACTACAGTTCTACTGGTTGGCAAGACTTGCCACTCACAAATGGTATACAAGAATATTCAAGTAGTTATACACCTCAATTCAAATTGGTAGAAATGAACGACATGATAATGTTCTCTTTAAGAGGTGCTATAAAAAATGTTACAAGCTCAAGACAAATGTTTGCGCAGATACCACCTTATATACTAAGAAAGTTAGTGCCACCGCACCCTTATGTGCAATCGGGAAGCGTTAAAAACGGAGAAGCTACATTCGTTCGTTTAAGTATCGAAAGAAACGGAGAGGTCGGTATCATTGCATTTTCAAAACCTAATGAAATGAACGCGTCAGACTTCTATCCGATTGATACAACAATAGTAATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
04de1fb59d4366af8cb1b64bf8cf85536a6df1dd3d870682d7d5ee6e010ad4bf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7943
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50