Protein

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Genbank accession
YP_007673772.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSEDSTITVAAGAVGNGGSGMLATVVVSSGAVTSVTITAQGTNYGLNDVLLVDDSTVGGGGGSNFQYTLSSSNTGISSVTNISLSGAGYTIGDVLSVDDATVGGGGGSSFNYTVTNVGFITGLAVNLPGAAYEASDTLILGPVGGEGATQGTGFAATIATITSTKQLEMDQLGLLTLGPTIGDQLALEPNGTITAKTTTGTVGNETVSTRWSISPAGATVITTLSGTSATFSGALAAQSTSTFTGLATFNGGITTAGVTTLVQTSALFADGTNSAPSIAFDNSTSTGIFRSSANVIGISNSGTEKYRFSADTFDAPAIQVDGTLGNTAPFFKVDPAVNKVLIGPATNFLSLDNTNTLKSEGSNVAVPLNFETKGSGNFVFKGGTDVDFSITDGTSEKFKIETSTGDLTIGGNLNAGQLRIRDNVIANNSSTGSRAFGQITSLAVTGGGSGYTDGTYTATATTSNGIGVGLTVTVTVSGGDFSAVTIVDKGRNYKVGDTITITAAGGGTGKTVAVQNIDGQGVVIKPITGSSAMIDTTGSLVIPSGTTNQRPDALDRLAGAIRFNTEQLQFEGYNGSDFVSLGGVRDVDQDTYILTEASPGTDEDTFEFYNAGFNSLSIDKDRFILKTTRIIDVQGVLNIDGIASGQDTVDFKSSGASIAKIRSSKDLEITSGLRLRNVGVRGTIATIGTVTSSSGAYTASTTFTGIASTTTIEGTGATFDVVIDGSGNVTSVAVNAGGTLYEVDEVITINGTLLGGASPANDVSFPVATISSTSPAFARMDVLQQDYITRMDSKSFLSFDANGSEAAFKVNRGWNGGTESYLTMFDSTATFVELDDCRVEGGQLASFPTSATIVAFDRNNFKGSKTLVTIESDDNKVHMFEVTIVCASNGTTAHATVTNSITSDNNLMDTTVSVVGSNVNISLAKSSAATSSSNFTGRFTTTKVKS
Physico‐chemical
properties
protein length:946 AA
molecular weight: 96104,70450 Da
isoelectric point:4,37833
aromaticity:0,06660
hydropathy:0,05190

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage MED4-213
[NCBI] 		889956 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673772.1 [NCBI]
Genbank nucleotide accession
NC_020845 [NCBI]
CDS location
range 35335 -> 38175
strand -
CDS
ATGTCTGAAGATTCTACAATTACAGTCGCTGCAGGAGCAGTGGGCAATGGTGGTAGTGGAATGTTAGCAACTGTTGTTGTATCTAGTGGTGCAGTAACTTCTGTAACTATTACAGCACAAGGAACAAACTATGGTCTTAATGATGTATTATTAGTAGACGATAGCACTGTAGGTGGTGGCGGTGGATCTAATTTCCAATACACCCTTAGTTCAAGTAACACAGGTATTTCGTCTGTAACAAACATATCTTTATCTGGTGCGGGTTATACTATTGGTGATGTTCTTAGTGTTGATGATGCAACTGTTGGTGGTGGAGGTGGATCTAGTTTCAATTACACTGTAACCAACGTTGGTTTTATTACAGGATTAGCTGTTAACTTACCAGGTGCTGCATACGAAGCATCTGACACTTTAATCCTAGGACCTGTTGGTGGTGAGGGAGCTACACAAGGAACTGGATTTGCTGCAACTATTGCAACTATAACAAGCACTAAACAGTTAGAAATGGATCAGTTGGGTCTTCTAACTTTAGGACCTACAATTGGAGATCAGTTAGCATTAGAACCAAACGGAACTATAACTGCAAAAACTACAACTGGAACAGTCGGTAATGAAACTGTTTCTACAAGATGGTCTATATCACCAGCTGGTGCTACAGTAATTACTACATTATCAGGAACATCAGCAACCTTTAGTGGTGCACTTGCAGCACAATCCACATCTACATTTACTGGGTTAGCAACATTTAATGGCGGTATTACAACTGCAGGAGTTACAACTCTTGTTCAAACATCTGCTCTGTTTGCAGATGGAACTAACTCCGCACCTAGCATAGCATTTGATAATTCAACATCAACTGGTATTTTCAGATCAAGTGCAAACGTAATTGGTATATCTAATAGCGGAACAGAAAAATATAGATTTAGTGCTGATACATTTGATGCTCCTGCAATCCAAGTAGATGGAACTTTAGGAAATACAGCACCATTCTTCAAAGTAGATCCTGCTGTTAACAAAGTATTAATAGGTCCTGCAACAAACTTCTTATCACTTGATAATACAAATACTCTTAAATCTGAAGGTAGTAATGTTGCTGTACCATTAAATTTTGAAACTAAAGGTTCTGGAAACTTTGTATTTAAAGGTGGAACTGATGTAGACTTTAGTATTACTGATGGAACATCAGAGAAATTTAAAATTGAGACATCAACTGGTGATTTAACTATTGGTGGTAATCTTAATGCGGGTCAATTACGTATTAGAGATAATGTAATTGCAAACAATAGTTCTACAGGGTCTAGGGCATTCGGTCAGATTACTTCACTTGCAGTTACAGGAGGTGGATCAGGATATACAGACGGAACATATACTGCAACAGCAACAACAAGTAATGGTATAGGAGTTGGATTAACTGTAACAGTTACAGTATCTGGTGGAGACTTCTCAGCAGTAACTATCGTTGATAAGGGTAGAAATTATAAAGTTGGAGATACTATTACAATTACTGCAGCGGGTGGTGGAACTGGTAAAACTGTCGCAGTTCAAAACATAGATGGTCAAGGTGTTGTAATAAAACCAATAACAGGATCTAGTGCAATGATTGACACCACTGGATCTCTTGTAATTCCATCAGGAACTACAAACCAACGTCCTGATGCATTAGATCGTCTAGCTGGTGCAATTAGATTTAATACTGAACAATTACAGTTTGAAGGTTATAACGGAAGTGACTTTGTATCTCTTGGTGGTGTTCGTGACGTTGACCAAGATACTTACATATTAACTGAAGCATCACCTGGCACTGATGAAGATACATTTGAGTTTTATAACGCAGGATTTAATTCATTATCAATAGACAAAGATAGATTTATTCTTAAGACGACTAGAATAATTGATGTTCAAGGAGTATTGAATATTGATGGAATAGCAAGTGGTCAAGATACTGTAGATTTTAAATCATCAGGTGCTTCTATTGCAAAAATTAGATCCAGTAAAGATTTAGAAATTACCAGTGGTCTTAGATTAAGAAACGTAGGAGTTCGAGGAACAATTGCTACTATTGGAACTGTTACATCAAGTAGTGGAGCATATACAGCATCAACTACCTTTACTGGAATAGCATCTACAACAACAATAGAAGGTACAGGAGCAACATTTGATGTTGTTATAGACGGATCTGGTAATGTGACATCTGTTGCTGTTAATGCGGGTGGAACATTATATGAAGTAGATGAAGTAATAACTATCAATGGAACTCTCCTTGGTGGAGCATCTCCTGCAAATGATGTTAGTTTTCCAGTTGCAACAATTAGTAGCACATCTCCTGCATTTGCTCGTATGGATGTCTTGCAGCAAGACTATATTACAAGAATGGATAGTAAATCATTCTTATCATTTGATGCGAATGGTTCTGAAGCAGCGTTTAAAGTTAATCGTGGTTGGAATGGAGGAACAGAATCATACTTAACAATGTTTGATTCTACAGCAACATTTGTAGAATTAGATGACTGTCGTGTAGAAGGTGGTCAGTTAGCATCCTTCCCAACATCTGCAACTATAGTTGCATTTGACAGGAATAACTTTAAAGGTTCTAAGACACTTGTAACTATTGAAAGCGATGACAATAAAGTCCATATGTTTGAGGTTACAATCGTATGTGCTTCAAATGGAACAACTGCACATGCAACAGTTACCAACTCAATAACATCTGATAATAATTTGATGGATACAACTGTTAGTGTTGTTGGTAGCAATGTGAATATCTCACTAGCAAAATCTAGTGCTGCTACTTCATCATCAAACTTCACTGGTAGGTTCACAACTACCAAAGTTAAATCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6fe4b894184c652893c12b31bade4ad2a295cc76b392d1c9799e229a06858b15
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3121
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-213 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank