Protein

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Genbank accession
QHJ72934.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MNKQNFNQSGGFPLETEVLADMQESFSIFNSLGNIAGNFAIISGCEETNGFVSNGVVFINGEVLEFRGGNVSSTVIIVENRIKKEFENGEEKEVLCIRYATFGIGSVTFNWADFKRPKSTIELTSELKTVNEELPKKADKTIIQRLIDRITELEKRPTFNNPIKNKGYFTLGDITGGQPVGSNLPVFGDCVSAVVASYVDGGNHYIDVSFLNTMPSVNYKVNLMVESLGTISNDDDAGNPIFKIIDTNKFKVGLYEATSTVQSIRIHFEITEL
Physico‐chemical
properties
protein length:273 AA
molecular weight: 30137,68290 Da
isoelectric point:4,85646
aromaticity:0,09524
hydropathy:-0,15275

Domains

Domains [InterPro]
cd22641
STR
9–136
cd22641
QHJ72934.1
1 273
Architecture
STR
STR 9-136 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QHJ72934.1
1 273
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,9942
Central domain 159 262 105 0,0256
C-terminal 263 273 10 0,9920
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-262
C-terminal
263-273

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage fF4
[NCBI] 		2692741 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Flavobacterium columnare NBRC 100251 = ATCC 23463
[NCBI] 		1218111 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Flavobacterium > Flavobacterium columnare

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QHJ72934.1 [NCBI]
Genbank nucleotide accession
MN850656 [NCBI]
CDS location
range 28836 -> 29657
strand +
CDS
ATGAATAAGCAAAATTTCAATCAGTCAGGAGGCTTTCCTTTAGAAACGGAAGTTTTAGCGGATATGCAAGAAAGCTTCAGTATTTTCAATAGCTTAGGCAATATAGCGGGAAACTTTGCTATAATTTCAGGATGCGAAGAAACTAACGGCTTTGTTTCAAATGGGGTGGTTTTCATTAATGGAGAAGTTTTGGAGTTTAGAGGTGGCAATGTCTCATCTACGGTTATTATCGTAGAAAACCGCATAAAAAAAGAGTTTGAAAACGGCGAAGAAAAGGAAGTTTTGTGTATCCGTTACGCCACTTTTGGTATAGGGTCAGTTACTTTTAATTGGGCTGATTTCAAACGCCCAAAGTCTACTATTGAGTTGACGTCGGAGTTGAAAACAGTTAATGAAGAGTTGCCCAAAAAAGCAGACAAAACAATAATTCAAAGATTAATTGATAGAATTACAGAATTAGAAAAACGTCCAACGTTCAATAATCCTATTAAAAACAAAGGGTACTTCACTTTAGGTGATATTACAGGTGGACAGCCTGTAGGCTCAAACCTTCCTGTCTTTGGGGATTGTGTTTCTGCTGTTGTAGCATCTTATGTCGATGGAGGTAATCATTATATCGATGTAAGTTTTTTGAATACAATGCCATCAGTTAATTATAAAGTTAACTTAATGGTCGAATCTTTAGGCACTATATCGAATGACGACGACGCTGGTAATCCTATATTCAAAATCATCGACACCAACAAGTTTAAAGTAGGCTTGTACGAAGCTACATCAACAGTGCAGTCTATTAGAATTCATTTCGAAATCACAGAACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e1c05ac610c2f9ac480ff2676b2c8b1475a2b48b6eeed0885b1b25d97642d33
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8622
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a prevalent prophage in the species of the phylum Bacteroidetes Laanto,E., Ravantti,J.J. and Sundberg,L.-R. 2020-12-02 — GenBank