Protein

View in Explore
Genbank accession
QFR57428.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGFFAGRIGDKKVLSLTSGNNKDVNNHTNPGWDTIFHSDMPHVVVLETHERDLWDGGDWYRCTRMPDRIIQVLSADYDRVVLTEVEFEDGTRRFIYGTSLGVGAKAYNAYFSNTVGSQASAGTMASMKTNVCASADLHMDISFYFEETPGTINEKLRDGTGCMYTWGVNSEWGDRGPGPPVGAPIRPNFETIIKAGWVLYRGAFSGNIAGSVSPPNRPLTIGADAMRHPWMRTTGVNSICLRGETLNRNMYGHMGPRYGKGSNPVGGPYAHNIQTESYQEVQYKAGFFRGPPNNFMGWENTDNNNAGSGWGNNAIYRDNNFRVPKRVRWYITNMKYNGQGFYAENVFGSRNQEIKISPREFIVNGINLMNTGWKFINQNDINYSPGNRPDIRVIATNVARFSGNPTVGNNGYVHFNQPLTRPDNGAEFGQGNISEMHVTTVGVYNFRSDAQWYVKSNPPEIGNQWGPVWSESTRPLRLVGGTGSADIGGNLRTSGNASHHLATLWLGVNNSRNGACVVTLDWKNDEWIAAAGIGCYNPLEDLTQWSEVDSRLRIFGNHFQKRVHQIMCLPVNMCVPFHFIRGTVTQCGVIPGNNAMQMKAMWAPATTNSATQGDYAIIYWLIARADGSVEVWVNVEMINIMNMRVILPEVRIAVQRLA
Physico‐chemical
properties
protein length:658 AA
molecular weight: 73252,52300 Da
isoelectric point:8,26222
aromaticity:0,10790
hydropathy:-0,41109

Domains

Domains [InterPro]
IPR059609
RBD
1–658
IPR059609
QFR57428.1
1 658
Architecture
RBD
RBD 1-658
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFR57428.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0035
Central domain 11 209 200 0,4683
C-terminal 210 658 448 0,9303
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage AmPh_EK80
[NCBI] 		2653643 Uroviricota > Caudoviricetes > Demerecviridae > Sugarlandvirus AmPhEK80 >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFR57428.1 [NCBI]
Genbank nucleotide accession
MN434094 [NCBI]
CDS location
range 109304 -> 111280
strand -
CDS
ATGGGCTTTTTTGCAGGAAGGATAGGTGACAAGAAAGTATTGTCTCTCACCTCTGGCAACAATAAAGACGTCAATAACCACACTAATCCAGGTTGGGATACTATATTCCATAGCGATATGCCTCACGTCGTAGTTTTAGAAACTCACGAGAGAGACCTCTGGGATGGTGGTGATTGGTATCGTTGTACTAGAATGCCAGACAGGATTATTCAGGTACTGTCCGCAGACTACGACAGGGTTGTCTTAACTGAAGTTGAGTTTGAGGATGGTACTAGACGTTTCATTTACGGTACATCCCTGGGTGTGGGCGCCAAGGCGTATAACGCTTACTTTAGTAATACTGTCGGTTCCCAGGCTTCTGCAGGTACTATGGCTAGTATGAAGACTAACGTTTGTGCTTCTGCAGACTTACACATGGATATTAGTTTCTATTTCGAAGAGACGCCAGGTACTATTAACGAGAAGCTACGAGATGGTACTGGGTGTATGTACACTTGGGGCGTTAACTCAGAATGGGGAGACAGAGGGCCTGGGCCGCCGGTTGGAGCTCCTATACGTCCTAACTTTGAGACTATTATTAAAGCTGGATGGGTGCTCTATAGGGGGGCTTTTAGTGGCAATATAGCCGGTTCTGTGTCTCCGCCCAATAGACCACTTACTATTGGTGCTGATGCTATGCGCCACCCATGGATGCGTACCACAGGAGTTAATAGTATATGTTTGCGTGGGGAGACTCTCAACCGTAATATGTACGGACATATGGGGCCTAGATACGGTAAGGGGTCTAATCCCGTTGGTGGTCCTTATGCTCATAACATCCAGACTGAGTCTTATCAGGAGGTTCAGTACAAAGCAGGTTTTTTCCGTGGTCCGCCCAATAACTTTATGGGGTGGGAGAACACAGATAACAACAATGCTGGTAGTGGTTGGGGTAACAACGCTATTTATAGGGATAACAACTTCCGTGTTCCTAAGCGTGTTCGCTGGTATATTACTAATATGAAATACAATGGGCAGGGGTTCTACGCAGAGAACGTATTTGGTTCCCGCAACCAGGAGATTAAAATCAGCCCTAGAGAGTTCATTGTAAACGGTATAAACCTAATGAACACTGGGTGGAAGTTCATAAACCAGAACGATATAAACTACAGCCCAGGTAATAGGCCGGATATCCGAGTTATTGCGACCAATGTTGCTAGATTTAGTGGCAACCCTACTGTTGGTAATAATGGATATGTTCACTTCAATCAGCCCCTAACTCGACCAGATAATGGTGCGGAATTTGGGCAAGGTAACATAAGTGAGATGCATGTAACCACTGTAGGGGTTTACAATTTTAGATCTGATGCGCAGTGGTATGTAAAATCTAACCCACCGGAAATCGGAAACCAGTGGGGTCCAGTATGGTCTGAATCAACCCGACCTCTCCGCCTGGTAGGTGGTACTGGCTCTGCTGATATTGGAGGGAACCTACGTACTAGCGGTAATGCTAGTCACCACCTGGCTACCTTGTGGTTAGGGGTTAATAACTCCCGAAATGGGGCTTGCGTCGTCACCCTAGACTGGAAAAATGATGAGTGGATTGCTGCTGCAGGGATTGGGTGCTACAATCCTCTAGAAGACCTTACTCAGTGGAGCGAGGTAGATAGTAGGCTGAGAATTTTCGGAAATCACTTCCAGAAACGTGTGCATCAAATCATGTGTCTTCCAGTTAACATGTGTGTGCCGTTCCACTTTATACGCGGGACCGTAACCCAGTGTGGGGTTATTCCGGGGAACAACGCCATGCAGATGAAGGCTATGTGGGCGCCTGCTACTACCAACTCTGCCACTCAGGGAGACTACGCTATTATCTATTGGCTGATAGCTAGGGCTGACGGTAGTGTTGAGGTTTGGGTTAACGTTGAGATGATCAATATTATGAACATGCGAGTGATTCTTCCTGAGGTTAGGATTGCTGTGCAAAGGCTTGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ee4796fbb487c12eab44f94b7fd8ce4c8a93e5f92d6291668281a44a51a28bfd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2292
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Klebsiella pneumoniae ST258 genomic variability and bacteriophage susceptibility Venturini,C., Ben Zakour,N., Bowring,B., Morales,S., Cole,R., Kovach,Z., Branston,S., Kettle,E., Thomson,N. and Iredell,J. 2019-05-05 — GenBank