Protein

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Genbank accession
YP_009207610.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MTLYIGRKNSGEPLLHLTNTARTEAEMKTGNTFSDTLFHSDMPFLTVIDIITITEFNDAGVYPGWSPYRAGTPKVTDPATVAKLDYYFNNGYLFDARAISIAPAGVDVQGLGTFGSSTSYNRLFSSPVLNGEYKNIRVSAGISNRSAASGTPPSFDNSISAIQIASSSSNLVTLSGGLARVGDLNLRFANTSNYISNSGSASGSPSLVTNWRNITTRMLYTTGASAVGPFSYPNNGSNTALRFKVQIYIFNLKKTSNGNGYEFGRAYGNNAAIRISGQEITVGDKSIKDLSFAYTSGSYSTSTGGGRRYDEAGVLGQSLLLEHYNRSCHDWWYNIYPAANMNLRITPGGNITTTAYIEITHMALRATYKYPTLKVGDPISFEVTANEIKMRDESNNSISIAKVGSGRRLKKSYPQFKVTLPGQTNLTPPTMRAGASVYTQPTSSVVIVGLTTYTKTEVISETPIPDEFFNRGKTCHISGGLINGTLSMSSYGMNKTIGLSNIRVTTSQINADTSLPVGQLASYNFYIEQNMSYYDFYYIQATYSNGNKGSVQINYNAEVIGNTYRITRVTRSTLSSSHIRGSVITDFNTTRYYDEVQSGVADNQLVINYPEVTFNLLLLGVEDK
Physico‐chemical
properties
protein length:624 AA
molecular weight: 68037,22630 Da
isoelectric point:9,03339
aromaticity:0,10577
hydropathy:-0,27276

Domains

Domains [InterPro]
IPR059609
RBD
1–50
IPR059609 DC_2140
YP_009207610.1
1 624
Architecture
RBD
STR
RBD 1-50 | STR 53-624
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009207610.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5946
Central domain 11 209 200 0,7604
C-terminal 210 624 414 0,5231
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage phi 3
[NCBI] 		1589298 Uroviricota > Caudoviricetes > Demerecviridae > Jesfedecavirus > Jesfedecavirus phi3
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009207610.1 [NCBI]
Genbank nucleotide accession
NC_028895 [NCBI]
CDS location
range 106029 -> 107903
strand +
CDS
ATGACTTTATACATTGGAAGAAAAAATAGTGGCGAACCACTATTACACCTTACAAACACAGCTAGAACAGAAGCTGAGATGAAGACAGGGAACACGTTCTCTGACACTCTTTTTCACTCTGACATGCCATTTCTTACTGTAATTGATATAATTACTATCACAGAATTCAATGATGCAGGAGTATACCCTGGGTGGAGCCCTTATAGGGCAGGAACCCCTAAAGTAACAGACCCAGCTACTGTAGCAAAATTAGACTACTATTTTAACAACGGTTATTTATTTGATGCTAGGGCTATAAGTATAGCCCCTGCGGGGGTGGATGTGCAAGGGTTAGGTACATTTGGTTCTAGCACCTCGTATAATAGGCTATTCTCTAGCCCTGTACTAAATGGTGAGTACAAAAATATCAGGGTTAGTGCAGGAATCTCTAACAGGTCTGCTGCCTCAGGAACTCCGCCATCCTTTGATAACTCTATTAGTGCTATACAGATAGCGTCTTCCTCAAGTAACCTAGTCACTCTATCTGGGGGTTTAGCTAGGGTAGGGGATTTAAATTTAAGGTTTGCTAACACCTCAAACTATATCAGTAATAGTGGCTCAGCTAGCGGGAGTCCGTCGCTGGTAACAAACTGGAGAAATATCACAACTAGGATGCTCTATACTACAGGTGCATCGGCTGTAGGTCCATTCAGCTACCCCAATAACGGCAGCAACACTGCACTGCGTTTCAAGGTTCAAATATATATCTTCAATCTCAAGAAAACTTCCAACGGCAATGGCTATGAGTTTGGTAGGGCATATGGAAATAACGCAGCAATACGAATAAGCGGCCAAGAGATTACTGTGGGAGATAAGAGTATAAAAGACCTCAGCTTTGCGTACACATCAGGAAGCTACTCTACTAGCACAGGAGGGGGTAGAAGGTATGACGAAGCGGGTGTGCTAGGCCAATCCCTACTTCTGGAGCATTATAACAGATCCTGTCATGACTGGTGGTATAACATTTACCCTGCAGCAAATATGAACCTTAGGATAACCCCCGGGGGTAATATAACCACAACAGCGTATATAGAGATAACGCACATGGCTTTGAGGGCCACATATAAATACCCTACATTGAAGGTTGGAGACCCTATAAGCTTTGAGGTGACGGCTAACGAGATAAAGATGCGGGACGAATCTAACAACTCTATCAGTATAGCAAAAGTAGGCTCTGGAAGGCGCTTGAAGAAGTCTTACCCACAATTTAAGGTGACCCTCCCTGGCCAGACCAACCTAACACCGCCTACGATGAGGGCAGGGGCTAGTGTTTATACTCAACCTACTAGCTCTGTAGTCATTGTGGGATTGACCACGTACACTAAGACCGAGGTCATTTCAGAGACGCCTATACCGGATGAGTTCTTCAATAGAGGTAAAACTTGCCACATTAGTGGGGGGTTAATAAATGGAACCCTTTCAATGTCGTCCTACGGCATGAATAAGACTATAGGGCTATCTAATATACGCGTGACTACCAGCCAGATTAACGCAGATACTAGCTTGCCCGTGGGTCAGTTAGCGTCCTATAACTTTTATATAGAACAGAATATGAGTTATTATGACTTCTATTACATTCAAGCTACATATAGTAATGGGAATAAAGGGTCGGTTCAGATAAATTATAACGCCGAGGTTATAGGCAACACATATAGAATAACTAGAGTAACCAGAAGTACCTTGAGTAGCTCTCACATTCGTGGGTCTGTTATAACGGATTTTAACACAACTAGGTACTATGACGAGGTGCAGAGCGGAGTGGCGGACAATCAATTAGTTATAAACTACCCAGAAGTGACGTTTAATCTACTGCTGTTGGGGGTTGAGGACAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
38cf2e671c9a393422d8ab5de399faa153ce8e63d70d45880da1c98aef910f6b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2296
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of three Vibrio cholerae specific bacteriophages Bhandare,S.G., Warry,A., Emes,R.D., Hooton,S.P.T., Barrow,P.A. and Atterbury,R.J. 2017-11-16 — GenBank