Protein

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Genbank accession
YP_003345497.1 [GenBank]
Protein name
predicted phage tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYQESSYKNLVFGVSQQAAQDRLPGQLQAQINMTSDLVAGLRRRASVEAVTAVGTFTDVKSVRQYNTDIGGTAVSLICDAVNGTIKVVEEATGVALADFQHDYLKAAVARSLRLVTLNDAVWLCNVEQKPVVSVAADRSKYPDPSHWGYYYVAAGAFQKAYTLTITDRSVDPPTSNTVTYTTPVSTVAEATPEFITNRLAELARAAWTAYGVTITVEGTFASIQCTTAKPTISTTAGSAYMRCSNAMSIRDAAELPARLPLVMNNIIVATGASNTKVFYRYNDAEKRWIEDASWEDLKDLSNLPLRMTQDETTDEYKLEAPVYERRAAGDEKSNPLLKFITQGITGMAAFQGRLVFLSNEYACLSASDNPLRFFRSTLSTVADNDPIEVAAQGSLTAPYEYALNFNKDLVMFSRHYQGIIPGNSMVTPRTANVALMTRYEVDTSAEPTAAGRSIFFGAPRSLGYVGVHEMTPSQYADSQYVADDVTSHIPRYIQGPWRFMVSSTTSNIMVAGTADHNELVIHEYLWNQSEKVHQSWHKWKFAWPVIDAYFSGDVLICLFGVEGSLYLCRIDLQRGAGDISPTVPRLDFFTEATCTVPGKLTVPNYVLDMGTDLRAFKVEGENAYLGQKVFSNVRGTTTTELDIPEALVGERYAVGYQYESMFTLTPPVLKDAKDVPITTSRGVLHKYRVSVANTGLFTYVVGDAARAGVPQTTTPMRLFSQRLGAGLPLADTSTVTVPGRVDLATASLTLSSSDYYDLNVRSIEYGFRFHQQFRRM
Physico‐chemical
properties
protein length:777 AA
molecular weight: 85540,59200 Da
isoelectric point:5,62407
aromaticity:0,10039
hydropathy:-0,13797

Domains

Domains [InterPro]
IPR058003
TTP
1–777
IPR058003
DC_0058
STR
1–777
DC_0058
YP_003345497.1
1 777
Architecture
STR
STR 1-777
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003345497.1
1 777
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9554
Central domain 139 337 200 0,2478
C-terminal 338 777 439 0,3793
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-337
C-terminal
338-777

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phi2
[NCBI] 		1450169 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003345497.1 [NCBI]
Genbank nucleotide accession
NC_013638 [NCBI]
CDS location
range 26980 -> 29313
strand +
CDS
ATGGCGTATCAAGAAAGCTCGTACAAGAACCTTGTGTTCGGTGTGAGTCAGCAAGCTGCACAAGATCGACTGCCCGGCCAGCTACAAGCGCAGATCAATATGACGAGCGATCTTGTAGCTGGCCTTCGTCGTCGCGCGAGCGTCGAGGCAGTAACAGCGGTCGGCACCTTCACTGACGTCAAGAGTGTCCGGCAGTACAACACCGACATCGGCGGCACAGCGGTCTCGCTGATTTGCGATGCAGTCAACGGCACCATCAAGGTGGTGGAGGAAGCGACCGGGGTTGCCCTGGCGGACTTCCAGCATGACTACCTCAAGGCAGCTGTTGCTCGCAGCCTTCGACTGGTGACGTTGAACGATGCGGTGTGGCTGTGCAACGTGGAGCAGAAGCCGGTTGTATCAGTGGCAGCGGATCGGTCGAAGTACCCGGACCCTTCGCACTGGGGTTACTACTATGTGGCTGCCGGTGCATTCCAGAAGGCATACACGCTGACGATCACTGACCGCAGCGTAGACCCACCAACCAGCAACACGGTGACGTACACCACACCGGTGTCCACTGTAGCGGAGGCCACGCCGGAGTTCATCACCAACCGACTGGCTGAGTTGGCGCGAGCCGCCTGGACAGCCTACGGTGTGACCATCACGGTCGAAGGCACCTTCGCTTCCATCCAGTGCACCACGGCCAAGCCGACCATCTCGACCACAGCGGGCTCCGCTTACATGCGGTGCAGTAACGCGATGAGCATCCGAGATGCAGCAGAGCTGCCCGCCCGGTTACCGCTGGTGATGAACAACATCATCGTGGCGACTGGTGCCAGCAACACCAAGGTGTTCTACCGGTACAACGATGCTGAGAAGCGTTGGATCGAGGACGCCAGCTGGGAGGACCTGAAGGACCTCTCCAACCTTCCTCTGCGGATGACTCAGGACGAGACGACCGATGAGTACAAACTGGAGGCACCCGTCTATGAGCGTCGAGCTGCCGGGGACGAGAAGTCAAACCCACTTCTCAAGTTCATTACCCAAGGTATCACGGGAATGGCAGCCTTCCAAGGACGGCTCGTCTTCCTCAGCAATGAGTACGCTTGCCTCTCGGCGTCCGACAACCCTTTGCGATTCTTTCGAAGCACGCTTAGCACCGTCGCGGACAACGATCCGATTGAAGTGGCAGCGCAAGGCAGCCTCACGGCTCCATACGAGTACGCCCTAAACTTCAACAAAGACCTCGTGATGTTCTCCCGGCACTACCAGGGAATCATCCCCGGCAACAGCATGGTGACACCGCGCACTGCCAACGTTGCACTCATGACCCGCTACGAAGTGGACACCAGCGCCGAACCTACCGCCGCTGGCCGCTCCATCTTCTTCGGTGCCCCGCGAAGCCTCGGCTACGTTGGTGTGCATGAGATGACGCCATCGCAGTACGCCGACAGCCAGTACGTTGCCGACGACGTGACCAGCCATATTCCCCGGTACATCCAGGGACCGTGGCGCTTCATGGTGTCTTCCACGACATCGAACATCATGGTGGCCGGTACAGCCGACCATAATGAGCTGGTCATTCACGAGTACCTGTGGAACCAATCGGAGAAGGTCCACCAGTCCTGGCACAAGTGGAAGTTCGCTTGGCCGGTGATCGACGCCTACTTCTCCGGCGACGTGCTGATCTGCCTCTTCGGCGTGGAAGGTTCGCTGTACCTCTGCCGCATTGACTTGCAGCGGGGTGCCGGTGACATCTCCCCAACCGTGCCGCGACTCGACTTCTTCACTGAAGCGACCTGCACGGTGCCGGGTAAGTTGACTGTGCCCAACTACGTGCTGGACATGGGCACCGACCTACGGGCGTTCAAGGTCGAGGGCGAGAACGCCTACCTGGGCCAGAAGGTATTCAGCAATGTCCGTGGCACAACCACGACGGAGCTGGACATCCCCGAGGCATTGGTGGGTGAGCGGTATGCTGTTGGTTACCAGTATGAGTCGATGTTCACCCTGACCCCACCGGTCCTCAAGGATGCGAAAGATGTACCTATCACGACTAGCCGTGGCGTGCTGCACAAGTACCGGGTCTCGGTTGCAAACACCGGTCTCTTTACCTACGTGGTCGGCGATGCTGCGCGAGCAGGCGTGCCGCAGACAACAACACCAATGCGGCTATTCTCGCAACGGTTGGGCGCTGGGTTACCTCTCGCCGACACATCAACCGTCACCGTCCCTGGCCGAGTAGACTTGGCTACTGCCTCGCTTACCTTGTCGAGCAGTGACTACTATGACCTGAACGTGCGCTCCATCGAGTACGGGTTCCGGTTCCATCAGCAGTTCAGGAGAATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
83eec4171b88431e659d102875ff0ff3c0c12b11d93b25b972adf56a7bbeee83
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8747
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50