Protein

View in Explore
Genbank accession
XPK42608.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MAIILHYTRNADGAFNRTKHVGMPMEFVVNRIPDGVPVRVYLGEIGDDTDVTDDFDALKDEDAVYHIIEGAGGGIGDAIGSVFSFILKPIAKLFGLNTAANANYSATNNQATSPNNSLTDRSNKPRPYERSYDICGTVQTIPNDLMQTYKVFNAAGALIEYAYYDAGRGHLHIEADGVTEADTRISEITGSSVTVYAPYTSPNNTSTPQLHIGDPIDQKLYVTFKNADVDGAVLPAPNDIAIDVQDYTVQRQGTTGVVVGDDAGFDEFLAVGDLAYFDNVYADTTPGSLGNEVNLDGRYTVLSVSETTLIVDVSTNQSVWNQLGTSVWFIGEEGNHLIGPADTYAASLSEWAYITRGTVDRVVANVAASNGMYKYNGDYNRASVTVELQYQMVDELKRPVGDIFTVQGTLTGRNTDYTGITLYGSLPTASRFRARMRRVSDTDKDFEGTVSDEVTFTNLYGQSPDTTPHYGNRTTVHCARKQTPRAAEVSEPELRMIATEMCYKYLGNGVFDTVMTPNTQAVQSLIRLARDPAVGNLELTTANMDKLLAVQEEIESYFGSELAGQFCYTFDDYGTTMQDIVQTIAEAVFCTAYRKGADIMLRFDRPVAGPEMVFTHRSKTTGTEKWTRTFNDSTTYDSLSFSYIDPDTNVQETIYIPEELGANTEEYESKGVRNYQQAYWLAWRRYQRNALSKVVVEFEATEEGALATPGGVISVVKGSRIAPQDGYVVAVNGLTLTLSQPVMFTPGDDHSIILKKRDGSVQSISVIKGSHDREVIMLSAPEEAIYTGNSALKTEFSFGNEARHNAQKIVVSSIDPGDDRTVKITGYNYDDGFYKYDGVAPYGSGFSDGFSNGFN
Physico‐chemical
properties
protein length:855 AA
molecular weight: 93782,81710 Da
isoelectric point:4,62558
aromaticity:0,10058
hydropathy:-0,32865

Domains

Domains [InterPro]
DC_0118
STR
1–687
DC_0118 DC_0808
NF040662
Unmapped
359–835
NF040662
XPK42608.1
1 855
Architecture
STR
RBD
STR 1-687 | RBD 704-851 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK42608.1
1 855
Domain Start End Length (AA) Confidence
N-terminal 1 236 236 0,9727
Central domain 237 435 200 0,5326
C-terminal 436 855 419 0,1679
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-236
Central
237-435
C-terminal
436-855

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage NicoleGrasset_Bas72
[NCBI] 		3398428 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK42608.1 [NCBI]
Genbank nucleotide accession
PQ850621 [NCBI]
CDS location
range 19625 -> 22192
strand +
CDS
TTGGCGATAATCCTGCACTACACGCGAAACGCTGATGGCGCTTTCAACCGTACAAAACACGTCGGGATGCCGATGGAGTTTGTCGTTAACCGTATCCCGGACGGCGTTCCGGTACGCGTCTATCTTGGCGAGATTGGTGATGATACTGATGTTACAGACGACTTCGACGCGCTCAAAGACGAGGACGCCGTGTACCACATTATTGAGGGCGCTGGCGGCGGCATTGGCGACGCCATCGGGAGTGTATTCAGTTTCATCCTTAAGCCAATCGCCAAATTGTTCGGGCTAAACACAGCGGCTAACGCTAATTATTCCGCTACCAACAATCAGGCTACGTCGCCTAACAACAGTCTCACCGACCGCTCAAACAAACCGCGACCTTATGAGCGTTCTTATGACATCTGCGGGACAGTGCAGACTATCCCCAATGACCTGATGCAGACGTATAAGGTGTTCAATGCCGCAGGTGCACTTATTGAGTACGCGTATTATGACGCCGGGCGCGGGCATCTGCATATCGAAGCAGACGGTGTAACCGAGGCAGATACCAGAATCAGCGAGATAACAGGTTCGTCGGTTACGGTGTATGCGCCATACACATCACCCAATAACACCAGTACGCCGCAACTCCACATCGGGGACCCGATAGACCAGAAGTTGTACGTTACATTTAAAAATGCCGATGTCGATGGGGCAGTTCTCCCCGCCCCCAACGATATCGCTATAGACGTGCAGGACTACACCGTCCAGCGGCAGGGAACAACCGGCGTTGTAGTAGGCGATGACGCTGGTTTCGATGAGTTTTTGGCTGTCGGAGACCTGGCATATTTCGATAACGTATACGCGGACACAACCCCAGGGTCTTTGGGTAATGAGGTTAACCTGGACGGCCGGTACACGGTTCTTTCGGTTAGTGAAACTACCCTTATTGTGGACGTCAGCACAAATCAATCAGTATGGAACCAGCTAGGGACGTCTGTGTGGTTTATAGGTGAAGAGGGTAACCATCTTATAGGCCCGGCGGACACTTACGCGGCTTCCCTCTCTGAATGGGCGTACATCACCCGCGGTACTGTCGACCGTGTTGTAGCCAATGTTGCCGCCAGCAACGGCATGTATAAATACAACGGTGACTATAACCGCGCTTCTGTGACAGTAGAACTGCAATACCAGATGGTTGATGAGTTGAAACGGCCCGTAGGTGATATATTCACCGTACAAGGAACTTTAACAGGCAGGAACACGGATTACACTGGGATAACTCTTTACGGAAGTTTACCAACTGCTTCCCGATTCCGCGCCCGTATGCGTCGTGTTTCTGACACCGATAAAGATTTTGAGGGTACTGTTAGTGACGAGGTTACTTTCACTAATCTGTACGGGCAGTCACCGGATACAACCCCGCACTACGGCAACCGCACTACCGTACACTGCGCTCGTAAACAAACGCCACGTGCCGCGGAGGTGTCCGAACCGGAACTACGCATGATTGCTACCGAGATGTGCTACAAATACTTAGGTAACGGCGTATTCGATACGGTAATGACCCCTAATACGCAGGCGGTGCAATCGCTAATTCGACTGGCTCGCGACCCGGCGGTAGGTAATCTGGAACTGACAACGGCAAACATGGACAAGTTACTCGCCGTGCAGGAAGAAATTGAGTCATATTTCGGAAGTGAATTAGCGGGGCAGTTCTGCTACACGTTCGACGACTACGGCACCACAATGCAGGACATTGTTCAGACTATAGCTGAAGCCGTGTTCTGTACTGCGTACCGTAAAGGCGCGGATATTATGCTGCGATTCGACCGTCCGGTTGCTGGGCCTGAAATGGTGTTCACCCACCGCAGTAAGACGACCGGTACGGAGAAATGGACGCGCACGTTCAACGATTCGACAACCTACGATAGCCTGTCGTTCTCGTACATTGACCCAGATACAAACGTACAGGAGACAATTTACATCCCGGAAGAACTCGGTGCAAACACTGAGGAATACGAATCAAAGGGTGTGCGTAACTATCAGCAGGCGTACTGGCTGGCGTGGCGTCGCTACCAGCGCAACGCGTTAAGTAAAGTTGTCGTAGAGTTCGAAGCTACAGAAGAAGGTGCGCTCGCTACCCCCGGCGGGGTAATCAGCGTGGTTAAAGGCTCTCGCATTGCGCCGCAAGATGGTTATGTTGTTGCCGTTAATGGGCTTACGCTGACGCTGTCGCAGCCGGTTATGTTCACCCCCGGCGACGACCACTCCATCATCCTCAAGAAGCGCGATGGCTCGGTGCAGAGTATCTCCGTTATCAAAGGAAGCCACGACCGCGAAGTGATTATGCTCTCCGCACCTGAGGAGGCAATTTACACAGGGAATAGCGCGCTAAAAACTGAGTTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGAAGATAGTTGTTTCTTCAATCGACCCGGGCGACGACCGCACGGTAAAGATTACTGGATACAACTATGACGACGGATTCTATAAATACGACGGCGTCGCGCCATACGGCAGCGGTTTCTCCGACGGATTCAGCAATGGTTTTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c8cc0c5916dd3b41db4fe209cd991b17403bb6eb8376dd8d0f52d1be49651512
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3065
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank