Protein

View in Explore
Genbank accession
YP_009324141.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MATLKQIQFKRSKVAGVRPTPAQLAEGELAINLKDRLLFTKDDTGAIIDLGFAKGGNIDGNVIHKGNYTQTGNYTIAGAISQTSGHFTTTGNITATGDITAKARLMTDNGEVLVRGTGTTHVRFQDLADARERGIIYSQNRAGDTKQILNVRVQDYTNSTSNIFAFNGDGLFYAPSISGGTSIKSPVIYTNTVNTDSKKIGDYDISSLANNTPFAEGETAINHLRVMRNAVGAGIFHEVNVNDGITWYSGDGLDTYLWSFTWSGGLKAGHSISVGLPGGSKGYSELGTASIALGDNDTGLKWHQDGYYFSVNNGTRTFLYSPAETTSLRKMVMGYSVNGTDLTTPPVENYALATVVTYHDNNAVGDGQTLLGYYQGGNYHHYFRGKGTTNVNTAGGLLVTPGNIDVVGGSVNIDGRNNASTLLFRGNTTGSSSVDNMTISVWGDTFNTVGGSRKNVMETSDATGWMHYIQRTTAGKVESYLNGSMNVIEGLTVVKNATFDGTISAAGGIATNAVNGLRIWNDDYGAIFRRSENGLHIIPTEFGQGKTGNIGPLRPFSIALDTGKVNIPDLQSRYNTITANGYIKFVGHGAGAGGYDIQYAQAAPIFQEIDDDAVSKYYPIVKQKFLNSKAVWSLGTEIESGTFVIHHLKEDGSQGHTSRFNQDGTVNFPDNVLVDGDINMKGVMTFDAGRLGSRDYFKFNHWGDSNNARDNIIQLEDSQGAHFSTERTLATGAIKTRFFGETFTDGTLYLNQMNNSSEGFSINNWGNSEVGRAAVMEVSDSKGYHFYTERRTDNSLAFDVAGNFTTHGPSGITIKNSTGARHIWFKDDSDAEKAVIWATDEGILHIRNNHGGSFSHHFQGAMIKVGERVPYAGDQGLIRGEVSGGAWVDWRERPAGILLDCQDSQNQAYSIWKAVHWGSDYLATMGVHAGGGNATVMMHMNKGGWYSWAANGDFTSSASVYCNDVYIRSDRRLKINVEDYEENAVDKVNKLKVKTYDKVKSLSDREVIAHDIGIIAQDLQEILPEAVSTSNVGSLDNPEEILTISNSAVNALLIKAIQEMSEEIKELKTPLFTKIARKIGKYFKF
Physico‐chemical
properties
protein length:1085 AA
molecular weight: 117819,40430 Da
isoelectric point:5,90969
aromaticity:0,09585
hydropathy:-0,36157

Domains

Domains [InterPro]
DC_0538
STR
1–672
DC_0538 IPR030392
IPR048390
ATT
451–558
IPR048390 IPR030392
DC_0907
STR
543–1071
DC_0907
YP_009324141.1
1 1085
Architecture
STR
ATT
STR
STR 1-450 | ATT 451-558 | STR 559-1071 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009324141.1
1 1085
Domain Start End Length (AA) Confidence
N-terminal 1 1030 1030 0,0345
Central domain 1031 1074 45 0,3751
C-terminal 1075 1085 10 0,1552
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1030
Central
1031-1074
C-terminal
1075-1085

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage MX01
[NCBI] 		1837930 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009324141.1 [NCBI]
Genbank nucleotide accession
NC_031934 [NCBI]
CDS location
range 156203 -> 159460
strand +
CDS
ATGGCTACTTTAAAGCAAATCCAATTTAAAAGAAGTAAAGTGGCCGGTGTACGTCCAACACCGGCCCAGTTGGCTGAAGGCGAACTGGCTATTAACTTAAAGGACCGTTTACTTTTTACTAAAGACGATACTGGAGCGATTATCGACCTTGGCTTTGCTAAAGGTGGTAATATCGATGGTAACGTTATCCATAAAGGAAATTACACCCAAACCGGTAATTATACTATAGCCGGAGCCATTTCACAAACGTCCGGACATTTTACTACTACTGGTAATATAACAGCAACCGGTGATATTACTGCAAAAGCCCGTTTAATGACAGATAACGGTGAAGTTCTTGTACGAGGTACAGGAACTACTCATGTTCGATTCCAGGATTTGGCTGATGCTCGCGAAAGAGGTATAATTTATTCTCAAAACCGTGCTGGGGATACCAAGCAAATCTTGAACGTTCGTGTCCAGGATTATACTAATTCGACATCTAATATTTTTGCATTCAACGGCGACGGTTTATTTTATGCTCCGTCTATTTCTGGTGGAACATCAATAAAATCTCCAGTAATTTATACTAATACCGTTAATACTGATAGTAAGAAGATTGGTGATTACGATATATCTTCATTAGCAAATAACACTCCATTTGCAGAAGGCGAAACGGCTATTAACCACCTCCGTGTTATGCGAAATGCTGTAGGAGCAGGTATTTTCCACGAAGTTAATGTTAATGACGGAATAACCTGGTATTCCGGAGATGGCTTAGACACTTATCTTTGGTCGTTTACCTGGTCCGGTGGATTGAAAGCAGGTCATTCTATTTCTGTAGGTCTTCCAGGTGGTTCTAAAGGATATTCTGAATTAGGAACTGCATCAATTGCTCTTGGCGATAATGACACCGGGTTAAAATGGCATCAGGATGGATATTATTTCAGCGTTAATAACGGCACGAGAACTTTCCTGTACAGCCCCGCAGAAACCACCAGTCTTAGAAAAATGGTTATGGGTTATTCTGTAAACGGTACCGATTTAACCACTCCTCCGGTGGAAAACTATGCATTAGCCACTGTTGTTACTTACCATGATAATAACGCGGTAGGTGACGGCCAAACTCTTTTAGGTTATTATCAAGGTGGTAATTATCACCACTATTTCCGTGGTAAAGGTACTACAAACGTTAACACTGCTGGCGGTTTGTTAGTTACTCCTGGTAATATTGATGTTGTTGGTGGTTCGGTTAATATTGATGGCCGTAACAACGCTTCGACTCTTTTGTTCAGAGGAAATACAACAGGAAGTAGTTCAGTTGATAATATGACTATCAGCGTTTGGGGTGACACTTTTAATACGGTAGGTGGTTCTCGTAAAAACGTAATGGAAACATCTGATGCTACCGGCTGGATGCATTATATTCAACGAACTACAGCAGGTAAAGTCGAATCCTATTTAAATGGTTCCATGAATGTAATTGAAGGATTGACTGTAGTAAAAAATGCTACATTTGACGGTACAATCAGCGCAGCCGGTGGAATCGCGACAAATGCTGTAAATGGTCTTCGTATTTGGAACGACGACTACGGTGCTATTTTCCGCCGTTCTGAAAATGGCCTTCATATTATTCCTACCGAGTTTGGACAAGGTAAAACCGGAAATATCGGACCACTTCGCCCATTTAGTATAGCTTTAGATACAGGTAAGGTTAATATTCCTGATTTACAGTCAAGATACAATACGATCACTGCGAACGGCTATATTAAATTTGTTGGCCATGGTGCAGGCGCTGGTGGTTATGACATTCAATATGCTCAAGCGGCTCCTATTTTCCAGGAAATTGATGATGACGCAGTAAGTAAATATTATCCTATTGTTAAACAGAAGTTTTTAAACAGTAAAGCTGTTTGGTCTTTAGGTACTGAAATAGAATCTGGTACATTCGTTATTCATCATCTGAAAGAAGATGGTTCACAAGGCCATACGTCTCGTTTTAATCAAGACGGTACTGTTAACTTCCCGGATAATGTTCTGGTCGACGGTGATATTAACATGAAAGGCGTGATGACTTTTGATGCCGGACGTTTAGGATCACGAGATTATTTTAAATTTAACCATTGGGGTGATAGTAATAATGCTCGTGATAACATCATCCAGTTAGAAGATAGTCAAGGCGCCCATTTTTCCACTGAACGTACTTTAGCGACAGGTGCAATTAAAACTCGTTTCTTTGGCGAAACATTCACTGATGGTACATTATACCTAAATCAGATGAATAATAGCTCTGAAGGATTCTCTATTAATAATTGGGGAAATTCAGAAGTTGGTCGCGCGGCAGTGATGGAAGTCAGTGATTCCAAAGGTTATCACTTCTATACGGAACGCAGGACAGATAACAGTTTGGCGTTTGATGTTGCTGGCAATTTTACTACGCATGGACCTAGCGGAATAACCATCAAAAACTCAACTGGCGCTCGCCACATCTGGTTTAAAGATGATAGCGATGCAGAAAAGGCTGTTATCTGGGCTACAGATGAGGGTATTTTACATATTCGCAATAATCATGGGGGTTCATTTAGTCATCACTTCCAGGGCGCAATGATTAAAGTGGGAGAGCGTGTTCCTTATGCCGGAGATCAAGGGCTTATTCGCGGTGAAGTTTCTGGTGGTGCATGGGTAGACTGGCGAGAGCGCCCGGCTGGTATTCTCTTAGATTGTCAGGATTCACAAAACCAAGCATATTCAATTTGGAAAGCAGTTCATTGGGGTTCTGATTATCTTGCGACAATGGGTGTTCATGCTGGCGGTGGTAACGCTACCGTAATGATGCATATGAACAAAGGCGGCTGGTATTCATGGGCTGCAAATGGTGATTTCACATCTAGTGCTTCTGTATATTGTAACGACGTTTATATTCGTTCTGACCGTCGTCTGAAAATTAACGTTGAAGACTACGAAGAAAATGCGGTAGATAAGGTAAATAAACTAAAAGTTAAAACCTACGATAAAGTTAAGTCTCTTTCTGACCGAGAAGTCATCGCACATGATATTGGTATTATCGCGCAGGATTTACAAGAAATTTTACCGGAAGCTGTTAGCACTTCTAATGTCGGATCTCTTGATAACCCAGAAGAAATTTTAACAATTTCTAACTCTGCTGTGAACGCGCTTTTAATTAAGGCCATTCAGGAAATGAGTGAAGAAATTAAAGAATTGAAAACGCCTCTCTTTACTAAAATTGCTCGCAAAATTGGTAAATACTTTAAATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5125d2efe3d26834d355fb370bb56485f5217b41e008cbbd6aded917eae82265
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5151
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of T4 like phage of avian pathogenic Escherichia coli Chen,M., Xu,J. and Zhang,W. 2021-08 — GenBank