Protein

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Genbank accession
YP_009594423.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 0,80
Protein sequence
MAYQTGPVSTISELIDTMVNFAAANGWTKDTISGGGNGWALHSASGGYWSFRYGQGPTVDAENGNPFGQAIAQNQGFYVYNNTGFNAALPAHRQPGWSASNYPAAGGWFDLKQAGPYTTYWLFVTEQYVHLVVEVQSKVYAHFGIGTLDKRGSSYGGGFYTQHHKLSYNPSSSEGNGLSDAATQYVWDSFRSVNNSRCQVDIRDGEIAGRELLGVYTNNAGAGDRGWSALGHGSDTYHPDDSYLDASANQMTGETVLIPNRVYMIGNQSRLRPLGEVADFAFCDMSFCSPAQVQIYGSEEWIVFPAFRVGISALTSSLQRGNAYRIRR
Physico‐chemical
properties
protein length:328 AA
molecular weight: 35759,89130 Da
isoelectric point:5,72195
aromaticity:0,13415
hydropathy:-0,37470

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009594423.1
1 328
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,3766
Central domain 11 208 199 0,0222
C-terminal 209 328 119 0,9986
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-208
C-terminal
209-328

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage SM1
[NCBI] 		1772332 Uroviricota > Caudoviricetes > Samunavirus >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009594423.1 [NCBI]
Genbank nucleotide accession
NC_041877 [NCBI]
CDS location
range 11257 -> 12243
strand +
CDS
ATGGCTTACCAGACTGGACCAGTAAGTACGATTTCCGAGCTGATCGATACTATGGTCAATTTCGCGGCAGCTAATGGCTGGACCAAAGACACTATCTCTGGCGGCGGTAACGGCTGGGCTTTGCATTCGGCAAGCGGCGGGTACTGGTCGTTTCGCTACGGGCAGGGCCCTACCGTGGACGCTGAGAACGGTAACCCATTCGGGCAAGCGATTGCACAGAACCAAGGGTTCTATGTCTACAACAATACGGGCTTTAATGCTGCGCTACCTGCACACAGGCAGCCGGGCTGGTCTGCATCCAACTACCCTGCCGCTGGAGGCTGGTTCGACCTCAAGCAGGCCGGGCCATACACCACTTACTGGCTGTTCGTAACTGAGCAGTACGTGCATCTGGTAGTAGAGGTGCAGTCCAAGGTCTACGCCCACTTCGGTATTGGTACCTTGGACAAGCGCGGCTCTAGCTATGGCGGAGGTTTCTATACGCAGCATCATAAACTGTCGTATAACCCCTCCTCCAGCGAAGGTAACGGCCTCTCTGATGCTGCGACGCAATATGTATGGGACTCGTTCCGCAGCGTGAATAACTCGCGTTGCCAAGTCGATATTCGGGATGGAGAGATCGCCGGTCGGGAGCTACTTGGTGTGTATACCAACAACGCGGGCGCTGGCGACCGGGGGTGGTCGGCCCTGGGCCACGGGTCGGATACCTATCATCCGGACGACAGCTATCTCGACGCCAGTGCCAATCAGATGACGGGCGAGACGGTTCTGATCCCGAACCGGGTTTACATGATCGGTAACCAGTCACGCTTACGCCCGTTGGGGGAGGTGGCAGACTTCGCTTTTTGCGATATGTCGTTCTGCTCACCAGCCCAGGTCCAGATTTACGGTTCGGAGGAATGGATCGTATTCCCGGCTTTCCGCGTAGGCATTAGTGCCCTAACCAGCTCGTTGCAACGCGGCAACGCCTATCGCATCCGGAGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e3ae8b0c072cd9c4ac7cf57f6a87f17f747043e42251b62ff36c89463634a5d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6338
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In silico genomic study of Pseudomonas phage SM1 Zawawi,N.A.M., Mat-Arip,Y., Wan-Jauhari,W.K., Fauzi,A.A. and Yee,F.J. 2014-03-01 — GenBank