Protein

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Genbank accession
QGZ18367.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSYTNGLDKPTDYFNTKLFTGNNSANHSITGVGFQPDLIWFKSRNNAHDHSLVDSVRGRKAIASNDTYAEITLNADKDFQSFDSDGFTVDVVEQLNSFNRSGEPIVTWNWLAGGTASSNTDGSITSSVSANTTAGFSIVSYTANNTSGATVGHGLGVEPNIVIIKRRNSAEAWPVYTKALNDNTKYLRLNDTDAVGTATDLFNSTTPNSSVVTLGNGGFSNRDTNTYIMYCFAEKKGYSKFGSYAGNSSTDGTFIYTGFKPALVIFKSTAGTESWSMVDNKRDTFNVVKKQLFPNLSNAAETTNNVMDFCSNGFKMRNNDSRYNLSGYTYIYMAFAENPFVTSTGIPTCAR
Physico‐chemical
properties
protein length:351 AA
molecular weight: 38258,62140 Da
isoelectric point:6,09998
aromaticity:0,11966
hydropathy:-0,41282

Domains

Domains [InterPro]
IPR055906
STR
9–339
IPR055906
QGZ18367.1
1 351
Architecture
STR
STR 9-339 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18367.1
1 351
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0017
Central domain 11 209 200 0,0008
C-terminal 210 351 141 0,9994
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-351

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC202P
[NCBI] 		2686464 No lineage information
Host Candidatus Pelagibacter sp. FZCC0015
[NCBI] 		2268451 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18367.1 [NCBI]
Genbank nucleotide accession
MN698248.1 [NCBI]
CDS location
range 27494 -> 28549
strand +
CDS
ATGAGTTACACAAATGGATTAGATAAACCAACAGATTATTTTAATACTAAACTTTTTACAGGAAATAATTCAGCAAACCATTCAATAACAGGAGTAGGATTTCAACCTGATTTGATATGGTTTAAAAGTCGTAATAATGCACATGACCATTCTCTTGTAGATAGTGTAAGAGGAAGAAAAGCAATAGCAAGTAATGATACATATGCAGAAATAACACTTAATGCAGATAAAGATTTTCAAAGTTTTGATAGTGATGGATTTACAGTAGATGTTGTAGAACAATTAAATAGTTTTAATAGAAGTGGAGAACCTATAGTTACATGGAACTGGTTAGCTGGTGGCACAGCATCATCAAACACAGATGGAAGCATAACCTCAAGTGTTTCTGCCAACACTACTGCTGGATTTAGTATTGTGTCTTATACAGCAAATAATACCTCTGGTGCAACAGTAGGTCATGGACTAGGTGTTGAACCTAATATAGTTATTATAAAAAGAAGAAATAGTGCAGAGGCTTGGCCTGTTTATACAAAAGCCTTAAATGATAATACAAAATATTTAAGATTAAATGATACTGATGCTGTAGGAACTGCAACTGATTTATTTAATAGTACAACACCAAATAGTTCGGTAGTTACATTAGGAAATGGTGGATTTAGTAATAGAGACACAAACACTTATATAATGTACTGCTTCGCAGAGAAAAAAGGCTACAGCAAGTTTGGAAGCTATGCTGGTAATTCTTCAACTGATGGTACATTTATCTACACAGGATTTAAACCAGCTTTAGTTATTTTTAAATCAACTGCTGGAACAGAATCATGGTCAATGGTTGATAACAAAAGAGATACTTTTAATGTTGTAAAAAAACAATTATTTCCAAATTTAAGTAATGCTGCAGAAACTACTAACAATGTTATGGATTTTTGTTCTAATGGTTTTAAAATGAGAAATAATGATTCAAGATACAACTTATCAGGCTACACATACATCTACATGGCATTTGCAGAAAATCCATTTGTTACAAGCACAGGCATACCGACTTGCGCAAGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5cc294e78440202560290b8b2970e29f22eebb76581f21f0dbe693ed5164782a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8976
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank