Protein

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Genbank accession
AEW47784.1 [GenBank]
Protein name
packaged DNA stabilization protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPIQQLPMMKGMGKDFKNADYIDYLPINMLATPKEVLNSSGYLRSFPGIAKRNDVNGVSRGVEYNTAQNAVYRVLGSKLYKGETVVGDVAGSGRVSMAHGRTSQAVCVNGQLVEYRYDGTVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGSWRDFIVCFGSSTIEYFSLTGATTAGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEELATGVMETLRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRAIDFMYEGNQITCGDKSEAVTGQLQFDISSQYDKQQEHLLFTPLFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
Physico‐chemical
properties
protein length:472 AA
molecular weight: 52413,57370 Da
isoelectric point:6,05048
aromaticity:0,10593
hydropathy:-0,25975

Domains

Domains [InterPro]
IPR021098
STR
4–472
IPR021098
AEW47784.1
1 472
Architecture
STR
STR 4-472
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AEW47784.1
1 472
Domain Start End Length (AA) Confidence
N-terminal 1 338 338 0,8262
Central domain 339 461 124 0,1477
C-terminal 462 472 10 0,9770
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-338
Central
339-461
C-terminal
462-472

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SPN9CC
[NCBI] 		1127357 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AEW47784.1 [NCBI]
Genbank nucleotide accession
JF900176 [NCBI]
CDS location
range 30646 -> 32064
strand +
CDS
ATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAATGCCGACTACATTGATTACCTACCAATCAATATGTTGGCCACACCGAAAGAAGTCCTCAACTCATCGGGTTATTTACGCTCATTCCCCGGCATAGCGAAGCGCAACGATGTAAATGGTGTATCGCGTGGCGTTGAATACAATACCGCTCAGAACGCTGTATATCGCGTTTTAGGCAGCAAGCTCTACAAAGGGGAAACCGTAGTCGGTGATGTAGCCGGAAGCGGTCGCGTATCAATGGCACATGGTCGGACATCACAGGCGGTATGCGTTAATGGTCAACTGGTCGAGTATCGCTATGATGGCACGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACGCAGTATGAGTTAGGTTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCAAAAGACGGTACTGATTCATGGTTTATCACTGACCTCGAAGATGAGTCGCATCCTGACCGGTACAGCGCACAATATCGTGCAGAATCGCAGCCAGACGGCATCATTGGCATCGGTTCATGGCGTGACTTTATTGTTTGCTTCGGTTCGTCAACGATAGAGTATTTCTCCCTGACAGGCGCAACCACCGCTGGCGCTGCGTTGTATGTCGCACAACCATCGTTGATGGTACAGAAGGGGATTGCCGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCCGGCTACTGGAGCACCTTCCGTCTACATCATCGGGTCAGGGCAAGCTTCACCAATTGCGACGGCCAGTATTGAGAAGATTATCCGCTCATACACAGCTGAAGAACTGGCGACTGGTGTAATGGAGACTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGTCATGTTCTGGTTTACGACGCATCGTCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACCGGTTTATACGACGATGTTTATCGCGCCATCGATTTCATGTACGAAGGCAACCAGATTACGTGTGGCGACAAGTCAGAAGCGGTGACGGGGCAGTTGCAATTCGACATCAGTAGTCAGTACGACAAGCAGCAAGAACACCTGTTGTTTACGCCCCTCTTCAAGGCAGATAACGCCAGATGCTTCGACCTCGAAGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCTGCAACCACAGACGGAATCAATTACGGTCGCGAACAGATGATTGAGCAGAATGAGCCGTTTGTGTACGACAAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTCGATTAATCGGATTCAAACTGCGTGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
db9f655f241ea337f4f4228bec30b2fa76e9228b001b13ec98f35264dc40087b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8629
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic Investigation of Lysogen Formation and Host Lysis Systems of the Salmonella Temperate Bacteriophage SPN9CC Shin,H., Lee,J.H., Yoon,H., Kang,D.H. and Ryu,S. 2014 24185850 GenBank