Protein

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Genbank accession
QBJ04408.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MSKPNFLQFMQEKDQLDEAFNSAPYELTMGKKNAGDVFFTFIDEDEKEYRIQFYTPQGLGKNVRQVFIGQKRGSVYPDAIARFKNPMRVIASMIEATKQFLATPLGKTIDGYAVNFSKKALERGMTLIPKIIRQSGLKQKLNVMDLTYAPVPDRGYVWLVRKGKDPAQVFDGPKMQGITWDDPDKVGDVPVQNNTPDVGTSSNNPDWNISVMAKSNGIFSSVVKVVGANDVTLSSNDLAIMVKDGAMAKIARTQTIAQVTVFNKEYVGRGEVDRKLMAASDRQGMGWELKSGGKIVAYVEFGVGAIQSNPDYEDKGQWKYDNRNQRGKQPQMVYSITKGRNTYSAMLSAHSSEPGTYVLHGSDGKSFRGPSADLIIGQARLPSPPIDMYNQFTRDSKEFWAQIDITEGVKVPSNGEVITKTKSTFTIRWNMGFPPSGPYAGAVLETTVLRVRENDYVISNIASTKNKTLNDLKSYDYRGDINSLLKEEGERYSLANSQLSTLTSISYNPNKLGYDLVSVGSYGEVRFNGQDIGLPSNRQVVINAVMKMNNEYEKTGGGKKTGVDLATYAGSIRDNAPKGRDLDWQIYASRDGQTLNVDWDITFRRNTTEGAYREFKAQIDRANQYLQTLYQDAKSKGYNPTEPNLMTLARAQQSDQWAKDDGESAYSEYEQSLGGNMQIKI
Physico‐chemical
properties
protein length:681 AA
molecular weight: 75937,56630 Da
isoelectric point:8,80678
aromaticity:0,09545
hydropathy:-0,59883

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage MK-13
[NCBI] 		2530042 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Shigella boydii
[NCBI] 		621 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBJ04408.1 [NCBI]
Genbank nucleotide accession
MK509462 [NCBI]
CDS location
range 136456 -> 138501
strand +
CDS
ATGTCAAAGCCAAATTTCCTTCAGTTCATGCAGGAAAAGGATCAGTTGGACGAAGCGTTCAACTCCGCTCCGTATGAGCTGACCATGGGCAAGAAGAACGCAGGCGATGTGTTCTTCACCTTCATCGACGAAGATGAAAAGGAATACCGCATTCAGTTCTATACCCCTCAGGGGCTGGGCAAGAACGTTCGTCAGGTATTCATCGGCCAGAAGCGCGGCTCTGTCTATCCTGATGCCATCGCTCGCTTCAAGAACCCAATGCGCGTTATTGCTTCCATGATCGAAGCGACCAAGCAGTTCCTGGCGACCCCTCTTGGCAAGACTATCGATGGCTATGCTGTCAACTTCTCTAAGAAAGCGCTGGAACGCGGGATGACACTGATTCCTAAGATCATCCGCCAGTCCGGCCTGAAGCAGAAACTCAATGTCATGGACCTGACCTACGCGCCTGTCCCTGACCGTGGTTATGTGTGGCTGGTTCGTAAGGGTAAAGATCCGGCTCAGGTATTCGACGGTCCGAAGATGCAGGGCATCACTTGGGATGATCCAGACAAGGTTGGTGACGTTCCGGTTCAGAACAACACCCCTGATGTGGGGACTTCGTCAAACAACCCCGACTGGAACATTTCCGTCATGGCGAAATCCAACGGTATCTTCAGTTCTGTTGTGAAGGTAGTCGGTGCCAACGACGTGACTCTGAGTTCCAACGATCTGGCCATCATGGTCAAAGACGGCGCAATGGCGAAGATTGCTCGCACCCAAACCATCGCTCAGGTGACTGTGTTCAACAAAGAGTATGTTGGTCGTGGTGAAGTAGATCGCAAACTCATGGCGGCTTCTGACCGTCAGGGCATGGGTTGGGAACTGAAGTCTGGTGGTAAGATTGTGGCTTATGTTGAATTTGGCGTTGGGGCTATACAGTCCAATCCCGACTATGAAGATAAAGGACAATGGAAATACGACAACCGCAATCAGCGCGGTAAACAACCTCAGATGGTGTATTCTATCACAAAAGGTCGAAACACTTATTCGGCCATGCTATCTGCTCATTCTTCTGAACCAGGCACGTATGTACTTCATGGCAGCGATGGCAAATCATTTCGTGGGCCATCTGCCGATCTGATTATTGGGCAAGCTCGTTTGCCGTCTCCCCCTATTGATATGTACAACCAGTTCACACGCGATTCCAAAGAATTCTGGGCACAGATCGACATCACCGAAGGCGTGAAAGTTCCCAGCAATGGTGAGGTCATCACCAAAACCAAATCCACCTTCACCATACGTTGGAACATGGGATTTCCTCCATCAGGGCCATACGCTGGGGCAGTGCTAGAAACAACGGTACTGCGGGTGCGTGAAAATGACTACGTGATAAGCAACATTGCGTCCACTAAAAACAAAACTCTGAATGATTTGAAGTCATATGACTACAGAGGAGATATTAACTCTTTGTTGAAAGAAGAGGGCGAGCGTTATTCTTTGGCCAACTCCCAATTGTCTACACTGACTTCTATTTCCTATAACCCAAATAAACTGGGATATGACCTTGTTTCTGTAGGGAGTTACGGGGAAGTCAGGTTCAATGGTCAAGACATCGGCCTCCCTAGTAATCGGCAGGTTGTGATCAACGCCGTAATGAAGATGAACAATGAATACGAGAAGACTGGCGGTGGTAAGAAGACTGGTGTTGACCTGGCAACATACGCAGGCTCCATCCGCGACAACGCTCCAAAAGGCCGCGACCTGGATTGGCAGATCTATGCAAGCCGCGATGGCCAGACCCTGAACGTGGACTGGGATATCACCTTCCGCCGCAACACAACTGAAGGTGCATATCGCGAGTTCAAAGCTCAGATTGACCGCGCCAACCAGTACCTGCAGACTCTGTACCAGGATGCGAAGTCCAAGGGTTACAACCCGACTGAACCAAACCTGATGACTCTGGCTCGCGCCCAGCAGTCTGACCAGTGGGCGAAAGACGACGGGGAGAGCGCATACAGTGAGTATGAGCAGTCCCTGGGCGGCAACATGCAGATTAAAATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
808c992814c1d29b31e9cc47066371ca2aaa2ce2f5ccf3921eebc39d872b7173
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5267
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prevalence of Shigella boydii in Bangladesh: Isolation and characterization of a rare phage that can robustly identify Shigella boydii type 1 Akter,M., Brown,N., Clokie,M., Yeasmin,M., Tareq,T., Baddam,R., Azad,M.A.K., Ghosh,A.N., Ahmed,N. and Talukder,K.A. 2019-11-07 — GenBank