Protein

View in Explore
Genbank accession
WGH15556.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANEVGTASNLEDLFGKIISFLTTSPALVAANQEWEALRLRRDNLLSHTSNLNEPSSGGNSRFMRHTFRYDPRSININNPMANGWEGHFYANNWSAGVSHNTWRLRQAREVKTVRIKAAVGTSYVNSAPKSFRLQYSDDNSSWTTALTVTDTTTFALGETRDFSVPGTPGAHEYWRILWDKTHSSTTTGAIAWTELLLLQADGTVANHFGSEAILKAPGNSGTEAIYTGIQAEYDAAAGWYNLFLNGYTGYDPNVQSWFLQPGAIPGYGATFTKAIPMVPCWDAAMPYWFSASGRSFRFGVKVSTNYEGGYLGFILPYATPGQYPYPLAVGGSLVPSDGNRSANWRYSFASYEHGVFPGPGANSGSESEGVWATMYVRDPGGDWRHFANRPNRNGYAVDGVQGFSFQYSLPFAVTGGNRSVWPHCENEKWTSGRRPYRECLGGGYIMQPCVLLQRSPSWMVFGELEGVYAISGYQNSAENTTTYNGKTHVIFQNAYRNTVHEFWAMSLD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56376,80820 Da
isoelectric point:6,46779
aromaticity:0,14145
hydropathy:-0,40904

Domains

Domains [InterPro]
DC_0072
STR
1–205
DC_0072
G3DSA:2.60.120.260
STR
69–198
G3DSA:2.60.120.260
IPR008979
STR
90–155
IPR008979 DC_0072
WGH15556.1
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WGH15556.1
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 40 40 0,2104
Central domain 41 273 234 0,5709
C-terminal 274 509 235 0,9473
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-40
Central
41-273
C-terminal
274-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PA_LZ03
[NCBI] 		3041206 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PA14
[NCBI] 		652611 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WGH15556.1 [NCBI]
Genbank nucleotide accession
OQ646790 [NCBI]
CDS location
range 15562 -> 17091
strand +
CDS
ATGGCGAATGAAGTAGGAACTGCCTCGAACTTGGAAGACCTGTTCGGGAAGATCATCTCCTTCCTGACGACCAGCCCCGCGCTGGTCGCAGCGAACCAGGAGTGGGAGGCTCTCCGGCTTCGCCGGGATAACCTGCTTTCTCATACCTCAAACCTCAATGAGCCTTCGAGTGGAGGTAACTCCCGCTTCATGCGGCACACCTTTCGCTACGATCCACGGAGCATTAACATCAACAACCCGATGGCCAACGGCTGGGAGGGGCACTTCTACGCGAATAACTGGTCCGCTGGAGTCAGCCACAACACCTGGCGTCTTCGTCAGGCCAGAGAAGTGAAGACTGTCCGGATTAAGGCAGCCGTTGGTACCTCCTATGTGAATTCGGCTCCGAAGTCCTTCCGTCTCCAATACTCGGACGACAACAGCTCCTGGACCACGGCACTCACCGTAACTGACACCACCACCTTTGCCCTCGGAGAGACACGGGACTTTTCCGTGCCGGGGACTCCAGGAGCTCACGAGTATTGGCGCATTCTTTGGGACAAGACACATAGCAGCACTACCACAGGTGCCATCGCTTGGACAGAGCTCCTACTGCTCCAGGCCGACGGGACGGTCGCCAACCATTTTGGCAGCGAGGCGATACTCAAAGCTCCTGGGAACTCTGGAACGGAGGCCATCTACACTGGCATCCAGGCAGAGTACGACGCAGCTGCCGGCTGGTACAACCTGTTTCTGAATGGCTACACGGGGTATGATCCGAACGTCCAGTCATGGTTTTTGCAACCGGGGGCTATCCCCGGCTATGGTGCCACCTTCACCAAGGCTATCCCGATGGTGCCTTGCTGGGACGCAGCGATGCCCTACTGGTTCAGCGCTTCGGGGCGATCCTTCCGCTTCGGGGTCAAGGTATCCACCAACTATGAGGGCGGCTACCTTGGCTTCATCCTTCCTTACGCAACGCCGGGGCAGTACCCTTACCCGCTCGCAGTTGGTGGGTCTCTTGTGCCCAGCGACGGCAACCGTTCGGCCAACTGGCGCTACTCGTTTGCGTCCTATGAACATGGGGTGTTCCCTGGACCAGGGGCTAACTCCGGTTCGGAATCGGAAGGCGTCTGGGCGACGATGTATGTGCGTGATCCGGGCGGAGACTGGCGGCACTTTGCTAACCGCCCTAACCGCAACGGTTATGCCGTTGATGGCGTTCAAGGCTTCTCCTTCCAGTACTCGCTCCCATTCGCGGTGACCGGCGGGAACCGTTCTGTCTGGCCTCACTGCGAGAATGAGAAGTGGACCTCCGGACGTCGCCCGTACCGTGAGTGCCTCGGTGGCGGCTACATCATGCAGCCATGCGTATTGCTCCAGCGCAGCCCGTCGTGGATGGTCTTCGGCGAGCTGGAGGGGGTGTACGCTATCAGTGGCTACCAGAATAGCGCGGAGAACACTACCACCTATAACGGGAAGACCCACGTAATCTTCCAGAACGCTTACCGCAACACCGTCCATGAGTTCTGGGCGATGTCGCTCGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
498b22faa06c66057534f9af02ec4fb89921e14de2556d2ecd51b58906496f6b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7094
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of Three Pseudomonas aeruginosa Viruses with Therapeutic Potential Wang,X. 2023 37125933 GenBank