Protein

View in Explore
Genbank accession
AWD90218.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGKGSGSSTHTPVEQPDTLKNKQLYKVLDLISEGPCKGFANQTNPLNSVFLAGTSVVNSAGETNINGVTMAYNLGTPDQDYISGFSDNSSGEVSVSVEVKKDQPVVRTINTAVDRIKLTVGGSALYSYETNGDKNRASMSMRFEIVKDGASYTANRLDVIDQKSSSEYLLSVELNSLPKPPFDVRVVRETEDSTSSNLINDSFWRSYTEIIDVKQSFPYCAVVGIAIDSEGFGSNPKRNYLWDGLYVQVPDNYDAESATYNGFWSGEFKIAWTQNPVWIYLDLLTNERYGLGKYISMDMVDIYKLYEVAQYCDELVDSGYGNYKERRFMCNAYITDQEYAYDVIDKFASVFNSMQINNGTQMSLSSDIPGDIKQQFTNSNIVGSFVYNSTELSDRHSVVQVEYSNAENNYEKEYIVIPDDELILRFGWSVKKVTAFATTSKGQAWRAGKYILESEKQNTMAVNFRTGTNGLRSLPGDLIEIADNEFATSTVGGRIKYVSEDKKTFALDRMIGFTNGDDVYLGFMDGREFKKEKIISVDETDSIVTLGAAAESIYEGSVFSISRVSVQPRVFRIVNIDIDFNKMEYIISAISHSSRKYSDVDNSTYFSGTLPSNEGMTTLPSIVNLSVRYNNDNSSPSVEATWQCPTAGSNISYMVKVVRAGLIVESVVVDKTSYSIRITDQGEYSIQVRCISTETGLMGPISKVIFVVAAPSPPVSLRFENGFFAQTCIPVESSNNIIMTDYQFFISPDELDFSTTGDVLAEAEQLGYGQSWTKSGLQVGQRYYWYVRSYNQFGFSEFISDSAVLEVPIDELIDQIERDLFESDAFKVLENGVKEQTKASIDNALSVYQNNMSDVESEIYFRKENDGRVADYKHSVYLINTESEVRAAEITQLNSKINDEIESKITIINETIATLESATSNRFVSLESKINDPSTGLQANATAIDNLSTNVNIIDGKLTAQASRVELLEANAGETSASIEEIKTVQATTDGKFNALYTMRIETSGAEKYVAGMQLGANNAGSFATFLVDQFSVASNVGGAKQLVFTTLNGQMIIRNALIGDGTIDTAKIKDAAITNAKIAGNLSSDNWDGNMGWSLNKSGGFEMVAVGLGRVRLDGTGLAIYTLSGALISKLGWQ
Physico‐chemical
properties
protein length:1135 AA
molecular weight: 125150,13630 Da
isoelectric point:4,61762
aromaticity:0,09868
hydropathy:-0,25586

Domains

Domains [InterPro]
DC_0014
STR
1–1133
DC_0014
IPR053171
Unmapped
3–967
IPR053171 IPR015406
IPR055385
ATT
92–212
IPR055385 IPR032876 IPR055383 IPR057587
IPR036116
STR
632–799
IPR036116
AWD90218.1
1 1135
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-212 | STR 213-335 | ATT 336-495 | STR 496-712 | ATT 713-816 | STR 817-1133 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWD90218.1
1 1135
Domain Start End Length (AA) Confidence
N-terminal 1 495 495 0,8546
Central domain 496 1079 585 0,0629
C-terminal 1080 1135 55 0,8996
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-495
Central
496-1079
C-terminal
1080-1135

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage Sucellus
[NCBI] 		2163632 No lineage information
Host Dickeya dadantii
[NCBI] 		204038 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWD90218.1 [NCBI]
Genbank nucleotide accession
MH059634.1 [NCBI]
CDS location
range 17525 -> 20932
strand -
CDS
ATGGGGAAAGGCTCTGGAAGTAGCACGCATACCCCGGTTGAGCAGCCGGATACGCTTAAAAATAAGCAATTATATAAAGTCCTAGACTTAATAAGCGAGGGGCCGTGCAAGGGTTTTGCAAATCAAACTAACCCACTTAATTCTGTATTTCTTGCAGGAACATCGGTTGTAAACTCTGCTGGCGAAACAAATATTAATGGCGTAACAATGGCGTATAACCTTGGAACTCCCGACCAAGATTATATTTCTGGATTCTCCGATAATTCTAGCGGAGAAGTTTCGGTGTCTGTTGAAGTTAAAAAAGACCAGCCAGTAGTAAGAACAATAAATACAGCAGTTGATAGAATAAAATTAACCGTTGGCGGTAGTGCTCTTTATTCATACGAAACAAACGGTGATAAAAACAGAGCATCAATGTCAATGCGTTTTGAGATTGTAAAAGATGGAGCATCATATACAGCCAACAGGCTCGACGTAATTGACCAGAAATCAAGCTCAGAATATCTTCTGTCTGTAGAATTAAACTCTCTACCTAAGCCGCCATTCGACGTACGTGTGGTCAGGGAGACGGAAGATTCAACATCATCAAATCTTATTAATGATTCGTTCTGGCGTTCATATACAGAAATCATTGACGTCAAGCAATCATTCCCGTACTGCGCCGTAGTTGGAATAGCGATTGACTCCGAAGGGTTCGGAAGCAACCCAAAAAGAAATTATCTTTGGGATGGTCTTTATGTTCAAGTGCCAGATAATTACGACGCTGAGAGCGCTACTTACAATGGATTCTGGTCTGGAGAGTTCAAGATTGCTTGGACTCAAAACCCGGTCTGGATATATTTAGACCTGCTAACTAACGAAAGATACGGACTTGGTAAATATATCAGCATGGATATGGTTGATATTTACAAGCTGTATGAGGTTGCACAATATTGCGACGAATTAGTTGATTCAGGTTATGGTAATTACAAAGAAAGAAGGTTCATGTGTAACGCATATATCACAGACCAAGAATATGCTTACGACGTCATAGACAAATTTGCATCAGTGTTTAATTCGATGCAAATAAACAACGGGACTCAGATGTCACTCAGTAGTGATATTCCCGGTGATATCAAACAGCAATTCACCAACTCAAACATAGTTGGCTCGTTTGTTTATAATTCAACAGAATTATCTGACAGGCATTCTGTTGTGCAAGTAGAATACAGCAACGCAGAAAACAATTACGAAAAAGAATATATAGTAATTCCTGATGATGAATTGATTTTGAGATTCGGATGGTCTGTGAAAAAAGTAACCGCGTTTGCCACGACGTCAAAAGGTCAGGCGTGGAGAGCAGGAAAATACATTCTCGAATCTGAAAAACAAAATACCATGGCTGTAAATTTCAGAACAGGAACTAATGGACTTCGGTCGCTTCCCGGAGATTTAATAGAAATTGCAGATAATGAATTCGCAACATCAACGGTAGGCGGCAGAATAAAATACGTATCAGAGGATAAAAAAACATTCGCTCTAGATAGAATGATTGGATTCACGAATGGTGATGACGTTTATTTGGGTTTTATGGATGGTCGTGAATTCAAGAAAGAAAAAATAATATCAGTAGACGAAACTGATTCAATTGTGACTCTTGGGGCGGCAGCCGAGTCAATTTATGAAGGTTCAGTTTTCAGCATCTCAAGAGTAAGCGTGCAACCAAGAGTTTTTAGAATTGTAAATATCGATATTGATTTCAATAAAATGGAATACATAATAAGCGCTATATCTCATTCATCTAGAAAGTATTCTGATGTTGACAATAGCACTTATTTCTCAGGAACACTGCCTTCAAATGAGGGGATGACCACACTTCCGTCTATAGTAAATCTATCCGTAAGATACAACAATGACAACTCGTCACCTTCTGTTGAGGCAACTTGGCAATGCCCGACTGCCGGTAGCAATATATCGTATATGGTAAAAGTCGTCAGAGCTGGGCTTATTGTTGAGTCAGTTGTTGTGGATAAGACATCTTATTCAATAAGAATAACAGACCAAGGCGAGTATTCAATACAGGTTAGATGTATAAGTACTGAAACAGGACTAATGGGGCCGATATCAAAAGTTATTTTTGTCGTAGCCGCACCTTCACCGCCTGTATCGCTCAGGTTTGAAAATGGATTCTTTGCTCAAACATGTATTCCAGTTGAATCGTCAAATAACATTATAATGACTGATTATCAGTTTTTTATATCTCCTGACGAGTTGGATTTTTCCACCACTGGTGACGTATTGGCAGAAGCTGAGCAGTTAGGTTATGGTCAGTCTTGGACTAAATCAGGTTTGCAGGTTGGTCAGCGTTATTACTGGTACGTTCGCTCTTACAACCAATTCGGATTCTCTGAGTTTATTTCTGACTCAGCGGTTCTTGAGGTTCCAATTGATGAGTTGATTGACCAGATAGAGCGCGACCTGTTTGAATCTGATGCGTTCAAGGTTCTGGAAAATGGCGTCAAGGAACAGACAAAGGCATCAATAGATAACGCTCTTTCAGTATATCAAAATAACATGTCCGATGTTGAGTCAGAGATTTATTTCAGGAAAGAAAATGATGGAAGAGTAGCAGACTATAAACATTCCGTTTACTTAATTAACACAGAATCAGAAGTTAGAGCCGCTGAAATAACTCAACTTAACTCAAAAATTAATGACGAAATTGAATCTAAAATAACAATAATAAATGAGACTATCGCAACATTGGAGAGCGCTACGTCAAATAGATTCGTTTCGCTTGAGTCAAAAATTAATGACCCGTCAACTGGCCTGCAAGCCAATGCGACCGCAATTGACAATTTAAGCACAAACGTAAATATTATTGACGGTAAGTTAACGGCTCAGGCCTCAAGGGTTGAGCTGCTTGAGGCCAATGCCGGAGAGACATCGGCGTCAATAGAGGAGATTAAAACCGTACAGGCAACTACTGACGGGAAATTTAATGCACTGTACACAATGAGAATAGAGACATCAGGGGCTGAAAAATATGTTGCTGGTATGCAGCTTGGTGCAAATAACGCAGGCTCTTTTGCCACGTTCCTAGTAGACCAATTCTCAGTTGCATCAAATGTTGGTGGCGCAAAGCAATTGGTATTTACAACACTCAATGGCCAGATGATAATAAGGAATGCGTTAATCGGTGATGGTACTATTGATACAGCCAAGATTAAAGATGCGGCTATAACAAATGCAAAAATTGCAGGAAATCTAAGCTCAGATAATTGGGATGGAAACATGGGATGGAGTTTAAACAAATCCGGTGGATTTGAGATGGTTGCTGTAGGGCTTGGAAGAGTTAGATTAGATGGAACTGGGCTGGCAATCTATACTTTATCTGGTGCTTTAATATCTAAATTAGGGTGGCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
db357d1d81cbdd67bafe9cdd98795ee25c3fb21f6d09232c224f0ffb264ec94a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7781
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank