Protein

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Genbank accession
QDJ96410.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MADYIVNKTDSSFPPITVPGKRVNDTDLDVTLLGKIRREYGEILNEDLLNILENFACPELSQSNPISPDLSVTSKSQLTNPTVGQFWYNTSRGNMFHWSGTEWIQLPSREAYAANWGQVIHGQQIPKPVSPITGRVFDYDECIWSVAPSIILGKVGFLNCTTDDNATVTIRYRYSGGTEFHNGTANYLIIGIGGNAVSGPYPAVPAPSPTPTVTPTMTATVTPTPTLSVTPSITRSAAAAPTPTPTSTMSPTPVVSNTPVPSNTPVPSNTPAPSSTPPASPTPTPKPPLSNIIVGGEYSAASQVNTGAQVGAAVGFRNNGTVGYSQNRGGSLSKTQWLLSGSPSEFELAFVSSFDAQFPASSSFSTPAGPNTPGNGAVWYDMGGNGLSWSIASTRDVVNMYVNFQIRRKNDSSQIVTGTISLYGQAGTPV
Physico‐chemical
properties
protein length:430 AA
molecular weight: 45413,09590 Da
isoelectric point:5,44287
aromaticity:0,08372
hydropathy:-0,23209

Domains

Domains [InterPro]
DC_0522
ATT
11–141
DC_0522
DC_1317
STR
105–263
DC_1317
QDJ96410.1
1 430
Architecture
ATT
STR
ATT 11-141 | STR 142-263 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp13
[NCBI] 		2591401 No lineage information
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ96410.1 [NCBI]
Genbank nucleotide accession
MN047793 [NCBI]
CDS location
range 134132 -> 135424
strand -
CDS
ATGGCCGATTATATTGTAAACAAGACTGATAGTAGCTTCCCACCAATTACTGTTCCGGGTAAACGTGTAAACGATACTGACCTAGATGTTACATTGTTAGGGAAGATTAGGCGCGAATACGGTGAAATTCTAAACGAGGACTTATTAAATATCCTTGAGAATTTCGCATGTCCGGAACTTAGTCAAAGTAATCCAATTTCTCCTGATCTTTCTGTAACAAGTAAAAGTCAGTTAACTAACCCAACGGTTGGGCAATTTTGGTACAATACTTCACGAGGTAATATGTTCCACTGGTCAGGTACTGAGTGGATTCAATTACCATCCCGTGAAGCATATGCTGCCAACTGGGGACAGGTAATTCATGGACAACAAATTCCGAAACCAGTTAGTCCGATCACAGGTAGAGTGTTCGATTACGATGAATGTATTTGGTCGGTAGCCCCATCGATTATTCTAGGAAAAGTAGGTTTCTTAAACTGTACTACAGATGATAATGCTACGGTTACGATTAGATATCGGTATTCTGGTGGAACGGAATTCCATAATGGTACCGCAAACTACTTAATCATCGGTATTGGTGGCAATGCCGTAAGTGGTCCATATCCAGCAGTACCGGCACCATCACCTACTCCTACCGTTACTCCTACGATGACGGCGACGGTAACGCCTACTCCAACGTTATCAGTCACACCATCTATTACACGTTCTGCGGCAGCAGCACCAACTCCGACGCCAACCTCAACGATGTCACCAACGCCGGTAGTATCCAATACTCCAGTGCCATCCAATACTCCAGTGCCATCCAATACACCAGCACCATCGAGTACCCCACCCGCCAGTCCTACACCGACGCCCAAGCCGCCACTATCTAATATCATTGTAGGTGGTGAATACTCTGCTGCGTCACAGGTAAACACTGGCGCACAAGTTGGCGCAGCTGTTGGATTTAGAAATAACGGAACGGTAGGTTACTCACAAAATCGCGGAGGATCGCTATCTAAAACCCAATGGCTTCTCAGCGGAAGTCCATCCGAATTCGAATTGGCATTCGTATCAAGCTTCGATGCTCAATTTCCTGCAAGCTCATCATTTAGTACTCCAGCAGGACCTAACACACCGGGTAACGGTGCCGTATGGTATGACATGGGAGGCAATGGTTTGTCATGGTCGATTGCAAGTACTCGCGACGTTGTGAACATGTATGTAAATTTCCAGATTCGTAGAAAGAATGATTCATCACAGATTGTTACTGGAACTATTTCCTTGTACGGTCAGGCGGGAACCCCCGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
28f40faed9f5105c6fa35a0f3f2f8516f477c7589e2a8b64150574924dae27d6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5146
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome sequence analysis of a novel phage Xoo-sp13 that infects Xanthomonas oryzae pv. oryzae Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-02-14 — GenBank